Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02232 ATGATTCAGATTTCATCAACCAACTACATGCCTCAATTACTTGGAATGGAGGATGCTTTGTTTAATGATCATGATTACCCAATGGATTCATTTGCATTccaatatgatgatgatatggcATATTTCAAGTCTTTCTCAGAATCACCACCAGAGAGTTCTTATTCCTCTCCTAATAACAATCATAAGCGCTTTCATTGCGAAAGCACGCAAAACAGCACTTTCCCGATTCATAGTAGTCCTGATCAATCTGTTGCTTCAGCAACACCGCCAACTAAACTACTCAAAGCGTCTCCAAAAATCATTTCGTTTGACCATTCCGATACATCTTCTGCTCGACAATTCTATGACATGGATGCAAAGGTTAAGAAGCTTAAAACCGAGATGGAGTATGGTGAAAACTTGAATTTTGCAACTTTGATTTCTCAAAGTGAGAACAAGGTCGCGAATAGAAACCCAATCCAAGCTCGAGATCATGTAATGGCCGAAAGAAAACGAAGGGAAAAACTTAGCCAGAGGTTCATTGCTCTTTCCTCCATTCTTCCCGGACTCAAAAAGATGGACAAGGCAACTATTTTGGAAGATGCTATAATTCATTTGAAGGAACTAAAGGAACGAGTGAAGACTTTGGAGGAACAAGTAGCCGATAAAAAAGTCGAATCCGCAGTTTTTGTGAAGAGATCTATTATCTTCGCCGATGATGATAGTTCCTCTTGCGACGAAAACTCAGATCAATCACTCCCGAAAATCGAAGCAAAAGTTTATGGTAAAGACATGCTCATCAGAATCCACTGCGACAAACACACTGGCCGAACCGCAACCACAATACTCAACGAACTCGAAAAGCACCATCTCACTGTTCAAAGTAGTTCTATATTGCCATTTGGAAATAACTATCTTGACATAACCATTGTTACTCAGATGAACAAAGAATATTGCTTGACAATAAAGGATCTCATAAGAAGCATAAGTCATGTTTTGaggaagctcatttaa 993 0.3776 MIQISSTNYMPQLLGMEDALFNDHDYPMDSFAFQYDDDMAYFKSFSESPPESSYSSPNNNHKRFHCESTQNSTFPIHSSPDQSVASATPPTKLLKASPKIISFDHSDTSSARQFYDMDAKVKKLKTEMEYGENLNFATLISQSENKVANRNPIQARDHVMAERKRREKLSQRFIALSSILPGLKKMDKATILEDAIIHLKELKERVKTLEEQVADKKVESAVFVKRSIIFADDDSSSCDENSDQSLPKIEAKVYGKDMLIRIHCDKHTGRTATTILNELEKHHLTVQSSSILPFGNNYLDITIVTQMNKEYCLTIKDLIRSISHVLRKLI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02232 330 Gene3D - 144 218 IPR036638 GO:0046983
Tsu04g02232 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 220 IPR036638 GO:0046983
Tsu04g02232 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Tsu04g02232 330 MobiDBLite consensus disorder prediction 50 89 - -
Tsu04g02232 330 PANTHER TRANSCRIPTION FACTOR NAI1 5 329 - -
Tsu04g02232 330 Pfam Helix-loop-helix DNA-binding domain 157 202 IPR011598 GO:0046983
Tsu04g02232 330 PANTHER BHLH TRANSCRIPTION FACTOR 5 329 - -
Tsu04g02232 330 Coils Coil 192 219 - -
Tsu04g02232 330 SMART finulus 159 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02232 Tsu-Chr4 24885354 24886734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02232 149 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.059 6.84e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g02232 HLH 5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02232 - - mtr:MTR_4g097920 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02232 04 24885354 24886734 Tsu04g02232 04 24885354 24886734 ECH
Tsu05g00488 05 3833058 3838836 Tsu04g02232 04 24885354 24886734 PCT