Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02227 ATGCTTCCTCTTCTCCCATCTCTCATCTTCCTCCTCACACTAACATTCCACTCAGTTTCTTCCAACCCTCACATAATCTCAGAATACCACACACTCCTCTCATTCAAATCATCTTCCATAACTAACGACCCAACAAACATCCTTTCCTCATGGAACCCAAAAACAACTCACTGTTCCTGGCACGGCATAACATGTGGTCAACACCGCCACGTCATCTCCATCAACCTctcttctctcactctcaccgGTACACTCTCCGACGACATTTCAAATCTCCCTTTTCTCAGTTCCCTCAACCTCGCCGACAACAAATTCTCCGGCCCAATTCCCTCTTCTTTCTCCTCTCTCATTTCTCTTCGTTACCTTAACCTCTCCAACAATGTCTTCAATGGCACTTTTCCTAATGAACTTTCCAATCTCTTCAATCTTCAAGTTCTTGATCTCTATAACAATAACATGACGGGTACTCTTCCGTTATCTGTTACTAAAATGAGTTTTCTTCGTCATTTGCATCTTGGTGGAAATTTTTTCACCGGAAAAATTCCACCGGAGTATGGTTTATGGACTCATCTTGAATATCTTGCTGTTTCTGGTAATGAACTTTCTGGAACTATTCCACCGGAGATCGGTAACCTTACTTCACTTCGAGAGCTTTACATTGGTTACTATAATACCTACGACGGTGGTATTCCGCCGCAGATTGGTAACTTATCAGAGATGGTGAGATTTGACGCTGCTTACTGTGGTTTAACCGGTGAAGTTCCGGCGGAGTTGGGTAAGCTTCAAAAGTTAGATACTTTGTTTCTTCAAGTGAATGCACTTTCTGGGTCTCTTACACCGGAGCTCGGAAACTTGAAAAGCTTGAAATCTATGGATTTGTCTAACAATGCTTTTACCGGTGAGGTTCCGGGGAGTTTTGCTGAGCTTAAAAATCTTACCCTTTTGAATCTTTTTAGAAATAAGCTTCATGGAGCTATACCGGAGTTTATCGGTGAGATGCCGGCGCTTGAAGTGTTGCAGATTTGGGAGAATAACTTCACTGGAAGTATTCCTCAGAATTTGGGGAAGAATGGGAGACTCACACTTGTTGATGTTTCTTCAAACAAGTTAACTGGTTCACTTCCTCCTAATATGTGTTTTGGGAATAAGCTTCAAACTTTAATAGCTTTAGGGAATTTTCTTTTTGGTCCTATTCCAGATTCATTTGGAAAGTGTAAATCTTTAAGTAGAATTAGAATGGGTGAGAATTTTCTAAATGGGTCAATTCCAAAAGGACTTTTTGGTCTTCCAGAACTTACACAAGTTGAACTTCAAGATAATCTTTTATCAGGAAACTTTCCTCAACCTGTTTCAATGTCTCCAAATCTTGGTCAAGTTACTCTTTCCAACAATAAACTTTCTGGGCCATTACCACCTTCTATTGGGAACTTTACAAGTGTTCAAAAGCTTCTTCTTGATGGGAATCAATTCTCAGGTAAAATCCCTTCTGAGATTGGAAAGTTACAACAGCTTTCAAAGATTGATTTTAGTCATAACAAGTTTTCTGGTCCTATTGCTCCTGAGATTAGTCATTGTAAGCTTTTAACTTTTGTTGATCTTAGCCGAAACGAGCTTTCGGGTGAAATTCCAAATGAAATTACTAGTATGAGGATATTGAATTACTTGAACCTTTCAAAGAATCATCTAGTAGGTACTATTCCTGGTTCTATTGCTTCAATGCAAAGCTTAACTTCTGTTGATTTTTCATATAATAATCTAACTGGTTTGGTTCCTAGTACTGGTCAGTTTAGTTACTTTAACTACACTTCTTTCCTTGGTAACCCTGAACTTTGTGGACCTTATTTGGGTCCTTGTAAAGATGGTGTTGCTGATGGTCCTCACAAACCTCATGTTAAAGGACCATTATCTTCTACTGTGAAGCTTTTGCTTGTTATTGGATTGCTTGTGTGTTCTGCTGTGTTTGCTGTTGCTACAATTTTCAAAGCTCGGTCTTTGAAAAAGGCTAGCGAAGCTCGTGCATGGAAACTAACCGCATTCCAGCGTTTGGATTTCACGGTTGATGATGTTCTTGACTCCTTGAAGGAGGATAATATCATAGGAAAAGGAGGTGCCGGCATTGTTTACAAAGGTGCAATGCCTAATGGTGATCTTGTTGCAGTGAAAAGGTTACCTGCTATGAGTAGAGGCTCTTCACATGATCATGGTTTTAATGCTGAGATTCAAACTTTGGGCCGAATTCGACACCGACACATTGTTAGATTATTGGGATTCTGTTCAAACCATGAGACAAATCTTTTGGTTTATGAGTACATGCCTAATGGAAGTTTAGGTGAAGTTCTCCATGGTAAGAAAGGTGGTCATTTGCATTGGGATACAAGGTACAAAATTGCTGTGGAATCTGCAAAGGGTCTTTGTTATCTTCATCATGATTGTTCACCCCTTATTGTTCATCGTGATGTGAAATCGAACAATATTTTACTTGATTCAAGTTTTGAAGCTCATGTTGCTGATTTTGGACTTGCTAAGTTCTTGCAAGATTCTGGAACTTCTGAATGCATGTCTGCTATTGCTGGTTCTTATGGATACATAGCTCCAGAGTACGCATACACATTGAAAGTCGATGAAAAAAGCGACGTATACAGTTTCGGTGTGGTACTCCTAGAACTCGTAGCAGGGCGAAAACCAGTTGGAGAATTCGGCGATGGAGTAGACATTGTACAATGGGTGAGAAAAATGACTGATTCAAACAAAGAAGGTGTACTAAAAGTTCTCGATCCTAGACTTCCCTCGGTTCCACTTCACGAGGTTATGCATGTGTTCTATGTAGCCATGTTATGTGTTGAAGAACAAGCTGTCGAAAGACCAACTATGCGCGAAGTCGTTCAAATGCTCACTGAACTTCCAAAACCATCACCTAGCTCAAAAAATGTTGAAGAAGACTTAACAATGTTAACAATCACTGAATCTTCTTTGTCTTCATCAAACAGTTTAGAGTCACCAGAAAAAGATCCTAAAGATCTTCTTAGTATATGA 3033 0.3937 MLPLLPSLIFLLTLTFHSVSSNPHIISEYHTLLSFKSSSITNDPTNILSSWNPKTTHCSWHGITCGQHRHVISINLSSLTLTGTLSDDISNLPFLSSLNLADNKFSGPIPSSFSSLISLRYLNLSNNVFNGTFPNELSNLFNLQVLDLYNNNMTGTLPLSVTKMSFLRHLHLGGNFFTGKIPPEYGLWTHLEYLAVSGNELSGTIPPEIGNLTSLRELYIGYYNTYDGGIPPQIGNLSEMVRFDAAYCGLTGEVPAELGKLQKLDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNAFTGEVPGSFAELKNLTLLNLFRNKLHGAIPEFIGEMPALEVLQIWENNFTGSIPQNLGKNGRLTLVDVSSNKLTGSLPPNMCFGNKLQTLIALGNFLFGPIPDSFGKCKSLSRIRMGENFLNGSIPKGLFGLPELTQVELQDNLLSGNFPQPVSMSPNLGQVTLSNNKLSGPLPPSIGNFTSVQKLLLDGNQFSGKIPSEIGKLQQLSKIDFSHNKFSGPIAPEISHCKLLTFVDLSRNELSGEIPNEITSMRILNYLNLSKNHLVGTIPGSIASMQSLTSVDFSYNNLTGLVPSTGQFSYFNYTSFLGNPELCGPYLGPCKDGVADGPHKPHVKGPLSSTVKLLLVIGLLVCSAVFAVATIFKARSLKKASEARAWKLTAFQRLDFTVDDVLDSLKEDNIIGKGGAGIVYKGAMPNGDLVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVESAKGLCYLHHDCSPLIVHRDVKSNNILLDSSFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVAGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQMLTELPKPSPSSKNVEEDLTMLTITESSLSSSNSLESPEKDPKDLLSI 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02227 1010 Pfam Leucine Rich Repeat 167 183 IPR001611 GO:0005515
Tsu04g02227 1010 SMART LRR_typ_2 92 115 IPR003591 -
Tsu04g02227 1010 SMART LRR_typ_2 573 596 IPR003591 -
Tsu04g02227 1010 SMART LRR_typ_2 285 308 IPR003591 -
Tsu04g02227 1010 SMART LRR_typ_2 116 140 IPR003591 -
Tsu04g02227 1010 SMART LRR_typ_2 309 333 IPR003591 -
Tsu04g02227 1010 ProSiteProfiles Protein kinase domain profile. 693 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02227 1010 Pfam Protein kinase domain 695 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02227 1010 Gene3D Ribonuclease Inhibitor 381 619 IPR032675 -
Tsu04g02227 1010 Gene3D Ribonuclease Inhibitor 25 220 IPR032675 -
Tsu04g02227 1010 SUPERFAMILY Protein kinase-like (PK-like) 686 964 IPR011009 -
Tsu04g02227 1010 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Tsu04g02227 1010 SUPERFAMILY RNI-like 246 597 - -
Tsu04g02227 1010 Gene3D Phosphorylase Kinase; domain 1 658 770 - -
Tsu04g02227 1010 Pfam Leucine rich repeat 95 152 IPR001611 GO:0005515
Tsu04g02227 1010 Pfam Leucine rich repeat 263 322 IPR001611 GO:0005515
Tsu04g02227 1010 Gene3D Ribonuclease Inhibitor 221 380 IPR032675 -
Tsu04g02227 1010 Gene3D Transferase(Phosphotransferase) domain 1 771 990 - -
Tsu04g02227 1010 MobiDBLite consensus disorder prediction 988 1010 - -
Tsu04g02227 1010 SUPERFAMILY RNI-like 83 327 - -
Tsu04g02227 1010 SMART serkin_6 693 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02227 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Tsu04g02227 1010 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 7 1006 - -
Tsu04g02227 1010 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 7 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02227 Tsu-Chr4 24846824 24850926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02227 26 1010 Receptor kinase-like Gene Family AT5G65700 79.272 0.0 1576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g02227 Pkinase 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02227 - - gmx:547592 1659.43