Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02218 ATGGGTCTTAATAACCAAGATGCTAGTAACAATCCAAGCCTTCAACTTATTCTAGGCTTAGCTCTCACTCTTACCAAACAAGACACAACAACATCCAACAACAACGTTGTTACAAAACCATATTCATCAAGtaataacaacaataactaTGAAACAGAACCATCTTTAACGTTGGGTTTATCCACTAAAAGTTACTATGAAGAACCTCTTGATTTTTCTACACAAACAAATTCACCTCATCATAGCGTTGTTTCTTCCTTCTCTAGTGGAAGagtgaagagagaaagagatgttAGCAGTGAATTAGAAATGGAAGCAACTGAAATAGAAAGagtttcttcaagaattagtgatgaagatgaagatggtgCCACTGCAGCAAGAAAAAAGCTTAGACTTACAAAAGATCAATCTGCTATGCTTGAAGAAAGCTTCAAACAACACAGCACTCTTAATCCTAAACAAAAGCAAGCTTTAGCAAGAGAGTTAAGTCTAACACCTCGACAAGTTGAAGTTTGGTTCCAGAACCGGAGAGCTAGAACAAAGCTGAAGCAGACAGAGGTAGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGATGAAAATAGGAGGCTACAAAAAGAGGTGCAAGAATTGAAGGCACTAAAATTAGCACAACCTTTGTATATGCCTATGTCAGCTGCTACACTTAGTATGTGTCCTTCTTGTGAGAGACTAGGTGGCGGCGGTGGTGGTGGCGGTGTTAACGGTGGTTCTTCCAATAAGAACAATTTCTCAATGGCTCCTAAGCCTCACTTTTACAACCCCTTTACAAATTCTTCAGCAGCATGTTGA 840 0.3571 MGLNNQDASNNPSLQLILGLALTLTKQDTTTSNNNVVTKPYSSSNNNNNYETEPSLTLGLSTKSYYEEPLDFSTQTNSPHHSVVSSFSSGRVKRERDVSSELEMEATEIERVSSRISDEDEDGATAARKKLRLTKDQSAMLEESFKQHSTLNPKQKQALARELSLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKLAQPLYMPMSAATLSMCPSCERLGGGGGGGGVNGGSSNKNNFSMAPKPHFYNPFTNSSAAC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02218 279 Coils Coil 190 220 - -
Tsu04g02218 279 MobiDBLite consensus disorder prediction 31 54 - -
Tsu04g02218 279 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Tsu04g02218 279 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Tsu04g02218 279 Gene3D - 132 182 - -
Tsu04g02218 279 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Tsu04g02218 279 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Tsu04g02218 279 SMART HOX_1 126 188 IPR001356 GO:0003677
Tsu04g02218 279 CDD homeodomain 128 185 IPR001356 GO:0003677
Tsu04g02218 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 16 279 - -
Tsu04g02218 279 SUPERFAMILY Homeodomain-like 122 185 IPR009057 -
Tsu04g02218 279 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Tsu04g02218 279 PANTHER - 16 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02218 Tsu-Chr4 24716022 24717514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02218 1 279 Homeobox Transcription Factor Family AT4G37790 60.345 6.65e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu04g02218 Homeodomain 4.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02218 K09338 - gmx:100784937 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00503 05 3998639 4000395 Tsu04g02218 04 24716022 24717514 PCT