Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02215 ATGGGGAGGGCACCTTGTTGTGACAAAGCCAGTGTCAAGAGAGGTCCATGGTCACCTGAAGAAGACTTCAAACTCAAATCTTATATCCAACAACATGGCACTGGTGGCAACTGGATAGCCTTGCCAAACAAAATGGgTCTCAAAAGGTGTGGAAAAAGTTGTCGTCTTAGATGGCTAAATTATCTTCGTCCAAACCTTAAACATGGATGTTTCTCCGAAGAAGAAGACAACATTATTTGCAGCCTCTATATCAATATCGGAAGCagGTGGTCCGTTATAGCAGCACAATTACCAGGACGGACGGATAATGATATAAAGAACTACTGGAAcacaaagttgaagaaaaaacatCTAACAAAGCAAAAGAAGGAACAACAATCTCAAGCTCGCCCAGTTTTTAGACTAAACCAAGAGATCAAGAGAGAAAATGGAAATTTGGTATTGCCTAATGAAGTTATCACTATCAACCAAACTCCAAATTATTTGCAAACAGAACACTATTCCTTTCCAAATCCTTCTTTGATCCAAAATTATAATCTCAAGGAAATTGAATTCTTTGATAATCATCAACTGCAGCCAATTAATTCTCAATACCCTTGTGACAATTATTTCCAACAAGATCAACTATGTTATCCGTCGACAATCAACAACATAAACTCTGCAGGGTTGGCCTATGTGAACCACCAACAAACAGATGGATCAACGAAGATCGGTAGTGGCGCGAACTCGACACTAATAGAAAGCAGTAGTTGGGGAGATATCATGAGTTCTTTGGTTTCTGATCATGAAGGTTGCCACCAACAAACAATGATTCAAGAAGATGTTACTTTTGATGAGTCTATGTTCTATGGAATGATCCAAACacaataa 870 0.377 MGRAPCCDKASVKRGPWSPEEDFKLKSYIQQHGTGGNWIALPNKMGLKRCGKSCRLRWLNYLRPNLKHGCFSEEEDNIICSLYINIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKHLTKQKKEQQSQARPVFRLNQEIKRENGNLVLPNEVITINQTPNYLQTEHYSFPNPSLIQNYNLKEIEFFDNHQLQPINSQYPCDNYFQQDQLCYPSTINNINSAGLAYVNHQQTDGSTKIGSGANSTLIESSSWGDIMSSLVSDHEGCHQQTMIQEDVTFDESMFYGMIQTQ 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02215 289 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tsu04g02215 289 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tsu04g02215 289 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tsu04g02215 289 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tsu04g02215 289 PANTHER OS09G0431300 PROTEIN 1 181 - -
Tsu04g02215 289 CDD SANT 16 62 IPR001005 -
Tsu04g02215 289 Gene3D - 70 140 - -
Tsu04g02215 289 SMART sant 67 115 IPR001005 -
Tsu04g02215 289 SMART sant 13 64 IPR001005 -
Tsu04g02215 289 Gene3D - 7 68 - -
Tsu04g02215 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu04g02215 289 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu04g02215 289 PANTHER OS09G0431300 PROTEIN 1 181 - -
Tsu04g02215 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tsu04g02215 289 CDD SANT 71 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02215 Tsu-Chr4 24652337 24653599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02215 1 194 MYB Transcription Factor Family AT3G49690 60.000 7.01e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g02215 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02215 K09422 - gmx:100791406 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00505 05 4029982 4031286 Tsu04g02215 04 24652337 24653599 PCT