Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02212 atgaagagaatgatggaaaatgatgatgatagtGTTGACATTAACAATGAAAATAATTGGTTAGGTTTTTCACTTTCTCCTCAAatgaataatattgatattCCTTCACATTCACATACTCATCATTCACAAAATTCATCTACTTCTGCTTCTGATGTAGTTGTTCCACTTCCACCAAGCTTTTACAATTCTACCCCTCTTAGTAACTATTGTTTCTCTTATGGACTTGAACATGAAAATGTTGGTTTGTACTCATTACTTCCTATTATGCCCCTCAAATCTGATGGATCTCTTTATGAAATGGAACATCTTAGCAGGTCACAAACACAAGCAATGGCTACTACTTCAGCACCAAAACTAGAGAATTTTTTAGGTAGTGAAGCTATAGGGACCCCTAATTATGCATGTAATAGTACTACTGTCACAGAAACAATGCCTTTAAGTTTAGACAGTATGTTCCAAAATCAAGTTCAACATATGAACAATCAACAacaattatcatattatgatgtAATGTTAGAAGGGTCAAAGCAAAACCAAAATTCAAGTGGAAATTTCAATGTTTCAAACATGAGTGAAGATCATGGACTTAGTGGTTTAAAGAATTGGGTTTTAAGAAATTTTCCAGCTAGTCATGGACATGATGAGTCAAAGATGATTGTTCCTGTTGTTTTGGATGAAAATGTAGGTGAATCAATGACTTATGGTGATTTGCATTCTTTGAGCTTATCAATGAGTCCTAGTTCACAATCTAGTTGTGTTACAACTTCACAGAATATGTCATCAACTGTTATTGATAATTCTGTTGCTATTGATACTAAGAAAAGAGGAAATGAAAAGATTGAACAGAAACAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACCTCTCAATATAGAGGTGTAACAAGgcaTAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAAGAAGGCCAAAGCAGAAAAGGAAGACAAGTTTACCTTGgtGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTTAAGTATTGGGGACCATCCACTCACATAAACTTCCCTTTggaaaattatcaaaatcaacttgaggaaatgaagaatatgacaagacaGGAATATGTTGCTCATTTAAgaagAAAAAGCAGTGGATTTTCAAGAGGAGCTTCCATGTATAGAGGAGTAACAAGACACCACCAACATGGAAGATGGCAAGCTAGAATTGGTAGGGTTGCTGGTAACAAAGATCTATATCTTGGAACCTTCAGTACACAAGAGGAAGCGGCTGAAGCTTACGATATAGCAGCTATAAAATTCCGAGGAGCTAATGCAGTAACCAACTTTGATATCGTAAAATATGATGTTGAAAAAATCATGGCAAGTAGTAACCTTCTTAGTATTGATCTAGCTAGAAGAAACAAAGAGGTTGTAGATATTAGTACAACTCAACACATTGATCAAAACAAGCCTAATTCTTCTGCATATGACAATAACACTCAAGAAGCAATTTTAATGCAGAAGAATATGGTTCTCTACCAATCCTCTCAACAACAGAATCAACCAAGAATTGAGAATGAAAGAACTCATCAATCTTTTTCATCGGTATCTTTCGATAACATGTTTCATCAAAAAGTAGTTGAGGAAGCAAGTAAGATGAGAACACATGTATCAAATGCTTCTTCATTGGCTACAAGTTTGAGCAGTTCAAGGGAAGGTAGTCCTGATAGAACAAGCTTGCAAAATCTCTCTGGATTAATGCCTTCAACAGCTTCTAAACTATTGGCTACTAATGCTCCAAATAGTAATGTGAATTCATGGGACCCTTCACATCATCTTAGGACTCAGATGCCAGTTTTTGCTGCTTGGACTGATGCATAG 1914 0.3375 MKRMMENDDDSVDINNENNWLGFSLSPQMNNIDIPSHSHTHHSQNSSTSASDVVVPLPPSFYNSTPLSNYCFSYGLEHENVGLYSLLPIMPLKSDGSLYEMEHLSRSQTQAMATTSAPKLENFLGSEAIGTPNYACNSTTVTETMPLSLDSMFQNQVQHMNNQQQLSYYDVMLEGSKQNQNSSGNFNVSNMSEDHGLSGLKNWVLRNFPASHGHDESKMIVPVVLDENVGESMTYGDLHSLSLSMSPSSQSSCVTTSQNMSSTVIDNSVAIDTKKRGNEKIEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIVKYDVEKIMASSNLLSIDLARRNKEVVDISTTQHIDQNKPNSSAYDNNTQEAILMQKNMVLYQSSQQQNQPRIENERTHQSFSSVSFDNMFHQKVVEEASKMRTHVSNASSLATSLSSSREGSPDRTSLQNLSGLMPSTASKLLATNAPNSNVNSWDPSHHLRTQMPVFAAWTDA 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02212 637 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 16 180 - -
Tsu04g02212 637 PRINTS Ethylene responsive element binding protein signature 443 463 IPR001471 GO:0003700|GO:0006355
Tsu04g02212 637 PRINTS Ethylene responsive element binding protein signature 302 313 IPR001471 GO:0003700|GO:0006355
Tsu04g02212 637 SMART rav1_2 301 373 IPR001471 GO:0003700|GO:0006355
Tsu04g02212 637 SMART rav1_2 403 467 IPR001471 GO:0003700|GO:0006355
Tsu04g02212 637 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 180 - -
Tsu04g02212 637 MobiDBLite consensus disorder prediction 564 595 - -
Tsu04g02212 637 SUPERFAMILY DNA-binding domain 402 461 IPR016177 GO:0003677
Tsu04g02212 637 Gene3D AP2/ERF domain 300 369 IPR036955 GO:0003700|GO:0006355
Tsu04g02212 637 Gene3D AP2/ERF domain 403 463 IPR036955 GO:0003700|GO:0006355
Tsu04g02212 637 CDD AP2 300 367 IPR001471 GO:0003700|GO:0006355
Tsu04g02212 637 ProSiteProfiles AP2/ERF domain profile. 301 367 IPR001471 GO:0003700|GO:0006355
Tsu04g02212 637 ProSiteProfiles AP2/ERF domain profile. 403 461 IPR001471 GO:0003700|GO:0006355
Tsu04g02212 637 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 173 635 - -
Tsu04g02212 637 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 173 635 - -
Tsu04g02212 637 SUPERFAMILY DNA-binding domain 300 369 IPR016177 GO:0003677
Tsu04g02212 637 MobiDBLite consensus disorder prediction 565 595 - -
Tsu04g02212 637 CDD AP2 402 463 IPR001471 GO:0003700|GO:0006355
Tsu04g02212 637 MobiDBLite consensus disorder prediction 32 52 - -
Tsu04g02212 637 Pfam AP2 domain 404 453 IPR001471 GO:0003700|GO:0006355
Tsu04g02212 637 Pfam AP2 domain 301 359 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02212 Tsu-Chr4 24610001 24613750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02212 1 504 AP2-EREBP Transcription Factor Family AT4G37750 51.498 1.05e-161 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Tsu04g02212 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02212 K09285 - gmx:100792451 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00509 05 4103791 4107674 Tsu04g02212 04 24610001 24613750 PCT