Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02197 ATGAAGATCATCGCCGCTTATTTGCTAGCTGTTTTGGGCGGTAACGCATCCCCTTCTGCTGCTGATATCAAAAGCATCCTTGGTTCAGTTGGAGTTGAGGGTGAGGACTCAAATATTGAGCTGCTCTTGAGCGAAGTCAAGGGTAAAGATTTTGCTGAGCTTATTGCAAGTGGAAGAGAAAAGTTGGCTTCTGTTCCATCTGGTGGTGGTGCAGTTGCTGTTTCCGCTGCATCTGGTGGAGGTGCTGGAGCTGCTGCTGCACCTGCTGCTGAAGCAAAGGAGGAAAAGAAGGttgaagaaaaggaagagtCCGATGACGACATGGGCTTCAGCTTGTTTGACTAA 345 0.4667 MKIIAAYLLAVLGGNASPSAADIKSILGSVGVEGEDSNIELLLSEVKGKDFAELIASGREKLASVPSGGGAVAVSAASGGGAGAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02197 114 MobiDBLite consensus disorder prediction 69 114 - -
Tsu04g02197 114 Gene3D - 1 59 IPR038716 -
Tsu04g02197 114 Pfam 60s Acidic ribosomal protein 17 113 - -
Tsu04g02197 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Tsu04g02197 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 114 - -
Tsu04g02197 114 MobiDBLite consensus disorder prediction 90 104 - -
Tsu04g02197 114 CDD Ribosomal_P2 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Tsu04g02197 114 Hamap 50S ribosomal protein L12 [rpl12]. 2 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02197 Tsu-Chr4 24345919 24347054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02197 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 81.429 1.77e-34 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02197 K02943 - nnu:104586918 123.635