Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02186 ATGGATCATAATAACAACAATGAAGAAGacttatcttcatcttcttctaaaCAACATTACTATAATAATTATCCTTATGATCAAACTCATCACCATCATGTTTCCCCTACtactattactactactacAAACACAAATACCACTTTTAATACTATTAACACCCCCACAAACACCGATATTAATTACTCTTACTCACCCTCCCAAGATTACTTCAACTTTGAATTCTCCAGTAACAATTCATGGTCACAAAACATCCTCCTTGAGACCGCACGTGCCATTTCCGACAACAATACAAACCGAATCCAACAACTTATGTGGATGCTAAACGAGCTAAGTTCGCCTTATGGCGATATGGAGCAAAAACTTTCATCTTATTTTCTCCAAGCTTTGTTTAGTCGAATGAACGATGCAGGTGATAGAACCTACAAAACGTTAACATTTGCGTCGGAGAAAACATGTTCTTTTGATTCAACTAGGAAGATGTTGTTGAAGTTTCAAGAAGTTAGTCCTTGGACAACATTTGGACATGTTGCATCAAATGGGGCTATATTAGAAGCATTAGAAGGTAACCCTAAACTTCACATAATTGATATCAGCAACACTTATTGCACTCAGTGGCCAACGCTTCTCGAAGCGCTGGCCACTCGCTCCGATGATACACCTCATCTTCGTTTAACCACTGTGGTTACCGCGGTTAGTGGTGGTTCAGTTCAGAAAGTCTTGAAGGAAATCGGTTCAAGGATGGAGAAATTCGCGAGGCTAATGGGTGTTCcatttaaattcaaaatcattttcaGTGATTTAAGAGAGTTGAACTTAAGTGATTTAGATATCCAAGAAGATGAGGCTTTGGCTATAAATTGTGTTAACTCTTTGCACTCAATATCCGGGGCAGGTAACCACCGCGACAAGTTTATATCTTTACTTCGAGGATTAGAACCTAGGGTTATGACGGTGGTTGAAGAAGAAGCCGATTTCGAAGTTTGTTTTGGTTCGGATTTCGTGGAAGGTTTCGGAGAGTGTTTGAGGTGGTTTAGGGTTTATTTTGAAGCACTTGAAGAGAGTTTTTCGAGAACAAGTTGCGAAAAGTTAATGCTCGAAAGAGAAGCGGGGAGAAGTATTGTTGATTTAGTTGCTTGTGATGCTTTTGAATCAGTGGAGAGACGCGAAACCGCGGCACGGTGGAGGAGGAGGTTGCACGGTGGAGGGTTTAATACGATGCCATTTAGTGATGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGAAGGTATAGAGAAGGTTGGTCAATGACACagtgttcttcttcttcttccgaTGACGGAATATTCTTGTCGTGGAAGGAAAAGCCAGTGGTGTGGGCCAGTGTGTGGAGGCCATGA 1380 0.3899 MDHNNNNEEDLSSSSSKQHYYNNYPYDQTHHHHVSPTTITTTTNTNTTFNTINTPTNTDINYSYSPSQDYFNFEFSSNNSWSQNILLETARAISDNNTNRIQQLMWMLNELSSPYGDMEQKLSSYFLQALFSRMNDAGDRTYKTLTFASEKTCSFDSTRKMLLKFQEVSPWTTFGHVASNGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAVSGGSVQKVLKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLSDLDIQEDEALAINCVNSLHSISGAGNHRDKFISLLRGLEPRVMTVVEEEADFEVCFGSDFVEGFGECLRWFRVYFEALEESFSRTSCEKLMLEREAGRSIVDLVACDAFESVERRETAARWRRRLHGGGFNTMPFSDEVCDDVRALLRRYREGWSMTQCSSSSSDDGIFLSWKEKPVVWASVWRP 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02186 459 MobiDBLite consensus disorder prediction 1 46 - -
Tsu04g02186 459 PANTHER PROTEIN SHORT-ROOT 7 458 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Tsu04g02186 459 ProSiteProfiles GRAS family profile. 73 458 IPR005202 -
Tsu04g02186 459 MobiDBLite consensus disorder prediction 8 46 - -
Tsu04g02186 459 Pfam GRAS domain family 84 458 IPR005202 -
Tsu04g02186 459 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 458 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02186 Tsu-Chr4 24240047 24241460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02186 63 459 GRAS Transcription Factor Family AT4G37650 62.927 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu04g02186 GRAS 3.6e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02186 - - cam:101506038 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02186 04 24240047 24241460 Tsu04g02186 04 24240047 24241460 ECH
Tsu05g00527 05 4283583 4285289 Tsu04g02186 04 24240047 24241460 PCT