Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02183 ATGGAGAGTTATTTAAATGAGAATTTTGGTGGTGTAAAATCCAAGAATTCTACCGAAGAAGCTCTTGGAAAATGGAGGAAATTATGTGGGGTTGTAAAGAATCCCAAAAGGCGGTTTCGTTTCACTGCCAATATCTCCAAACGTTACGAAGCTGCTGCTATGCGTCGCACAAATCAGGAGAAGCTAAGGGTTGCTGTTTTGGTTTCCAAAGCAGCATTTCAATTTATACAAGGCAAGTTTCATCAGAATTGTGTTCAACCAAGCGACTACGTTGTACCTGAGGATGTTAAAGCTGCAGGTTTCCAAATCTGTGCTGATGAATTGGGGTCTATTGTCGAAGGCCACGATGTAAAGAAGCTCAAATTTCATGGTGGAGTTGATGGCATTGCAGAAAAGCTTTCAACATCAACCACCAATGGATTAAGTGGTGATTCTGAATCACGGTATAGGAGACAAGAGCTTTTTGGCATCAATAAATTTGCCGAAACTGAAATTCGAAGTTTCTGGATTTATGTTTTTGAAGCTCTTCAAGACATGACACTGATGATCCTTGGAGTGTGTGCTATTGTGTCACTGATAGTAGGCGTGTTAACAGAAGGATGGCCAAAAGGAGCTCATGATGGTCTTGGAATAGTTGCAAGTATCTTACTTGTTGTCTTTGTGACAGCAACAAGTGATTATCGACAATCGTTACAGTTTAAGGATTTAGACAAGGAGAAGAAAAAGATTTCCATTCAAGTTACGAGAAACGGTTATAGGCAGAAAATGTCGATATACAATCTACTTCCTGGTGATATTGTCCATCTTAACATTGGAGACCAAGTGCCTGCAGATGGATTATTTGTTTCAGGATTTTCGGTATTGATCGATGAGTCGAGTTTAACAGGTGAGAGTGAGCCAATAATGGTGACTTCACAAAATCCATTTCTTCTCTCAGGAACAAAAGTCCAAGATGGATCATGCACAATGTTGATCACCACTGTTGGGATGAGGACTCAATGGGGTAAATTGATGGCAACTCTTAGTGAAGGTGGAGACGATGAAACACcgttgcaggtgaaactaaatGGAGTTGCAACGATTATTGGGCAAATAGGACTAGTCTTTGCAGTTATTACTTTTGCAGTTTTGGTTAAAGGACACTTGGGCCGCAAAATCCGCGAAGGAAGATTCTGGAGATGGTGTGGTGATGATGCAATGGAGATGTTGGAATACTTCGCTATTGCGGTTACTATTGTTGTCGTTGCGGTTCCAGAGGGGTTACCATTAGCTGTGACATTGAGTCTTGCATTCGCAATGAAAAAGATGATGAATGATAAAGCCTTGGTTAGGCATTTAGCAGCTTGTGAAACTATGGGATCGGCCACAACTATATGTAGTGACAAGACCGGTACACTAACAACCAACCGAATGACAGTTGTGAAAACATGCATTTGTATGAATAGCAAAGAAGTGAGCAATAATGATTCAAGTTTGTCGTCCAAACTACCAGATTCTGCTACAAAACTGTTGCTACAGTCGATATTTAATAACACGGGAGGAGAGGTTGTGTATAACAAAAAAGGCAAACGCGAGATATTAGGGACGCCGACCGAATCAGCAATATTGGAATTTGGGTTGTCCCTAGGTGGTGATTCTAAGGCTGAGAGAAAAGCTTGCAAAATTGTTAAAGTTGAGCCGTTCAACtctgaaaagaaaagaatggGAGTAGTTGTGGAGCTACCTGATGGAGGTTTAAGAGCTCATTGCAAAGGTGCTTCTGAAATAATTCTTGCTGCTTGTGACAAAGTTATTGGCTCGAACGGCGATGTTGTTGCTCTCGATGGAGAATCGATTAATTATCTTAACAGTATTATTAACCAGTTTGCTAATGAAGCACTTAGAACTCTTTGCCTTGCCTATATGGAAATGGAAAACGGATTTTCTGCTAATGATCCGATTCCTGCTTCTGGATACACTTGTATTGGAATTGTCGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCGGTTGCCGTGTGTCGTTCAGCTGGAATTGTGGTGAGAATGGTTACAGGAGATAATATTAATACTGCAAAGGCTATAGCTAGGGAATGTGGAATTTTAACAGATGATGGCATAGCTATTGAAGGTCCTGACTTTAGAGAGAAGACTCAGGAGGAAATGTTTCAACTTATTCCCAAAATTCAGGTTATGGCTAGATCATCACCTTTAGACAAACATACATTGGTTAAACAGCTGCGTACAACATTCGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCTCCAGCCCTTCATGAAGCCGACATCGGACTTGCAATGGGAATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTTATAATTCTGGATGATAATTTCTCCACAATAGTGACAGTGGCGAGATGGGGGCGTTCAGTTTACATCAATATCCAGAAATTTGTACAGTTCCAGCTGACCGTAAATGTGGTTGCATTACTAGTGAACTTCTCATCAGCTTGCATGACAGGAAGTGCACCACTGACCGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACTCTGGGAGCGCTTGCACTTGCGACCGAACCTCCAACAGATGATTTGATGAAGCGTGAGCCGGTGGGAAGGAAAGGTGATTTCATCAGTAATATCATGTGGAGGAATATATTAGGACAAGCAGTATATCAGTTTGTGGTAATATGGTTTCTTCAGTCAGTAGGAAAATGGGTCTTTTTCCTAAGGGGTCCTAATGCCGATGTAGTCTTAAACACACTCATTTTCAACACATTTGTCTTCTGTCAGGTTTTCAATGAGATAAACTCTCGCGAGATGGAGGAAATAGATGTTTTTAAAGGTATATGGGACAATCATGTATTCGTGGCGGTCATCGGTGTAACTGTAGTCTTCCAAATCATAATAGTTGAGTACCTGGGAAACTTTGCAAATACAACACCTCTATCTCTGATGCAATGGATCTTTTGCTTAGGGGTTGGATATATGGGCCTGCCAATCGCAGTTCGCTTAAAGCAGATACCAGTATGA 3063 0.4081 MESYLNENFGGVKSKNSTEEALGKWRKLCGVVKNPKRRFRFTANISKRYEAAAMRRTNQEKLRVAVLVSKAAFQFIQGKFHQNCVQPSDYVVPEDVKAAGFQICADELGSIVEGHDVKKLKFHGGVDGIAEKLSTSTTNGLSGDSESRYRRQELFGINKFAETEIRSFWIYVFEALQDMTLMILGVCAIVSLIVGVLTEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYNLLPGDIVHLNIGDQVPADGLFVSGFSVLIDESSLTGESEPIMVTSQNPFLLSGTKVQDGSCTMLITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGQIGLVFAVITFAVLVKGHLGRKIREGRFWRWCGDDAMEMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVSNNDSSLSSKLPDSATKLLLQSIFNNTGGEVVYNKKGKREILGTPTESAILEFGLSLGGDSKAERKACKIVKVEPFNSEKKRMGVVVELPDGGLRAHCKGASEIILAACDKVIGSNGDVVALDGESINYLNSIINQFANEALRTLCLAYMEMENGFSANDPIPASGYTCIGIVGIKDPVRPGVKESVAVCRSAGIVVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEEMFQLIPKIQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVARWGRSVYINIQKFVQFQLTVNVVALLVNFSSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKREPVGRKGDFISNIMWRNILGQAVYQFVVIWFLQSVGKWVFFLRGPNADVVLNTLIFNTFVFCQVFNEINSREMEEIDVFKGIWDNHVFVAVIGVTVVFQIIIVEYLGNFANTTPLSLMQWIFCLGVGYMGLPIAVRLKQIPV 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02183 1020 Pfam E1-E2 ATPase 243 437 - -
Tsu04g02183 1020 Gene3D - 456 804 IPR023214 -
Tsu04g02183 1020 Gene3D - 469 663 IPR023299 GO:0000166
Tsu04g02183 1020 PRINTS H+-transporting ATPase (proton pump) signature 615 633 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g02183 1020 PRINTS H+-transporting ATPase (proton pump) signature 759 775 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g02183 1020 PRINTS H+-transporting ATPase (proton pump) signature 791 816 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g02183 1020 PRINTS P-type cation-transporting ATPase superfamily signature 290 304 - -
Tsu04g02183 1020 PRINTS P-type cation-transporting ATPase superfamily signature 459 473 - -
Tsu04g02183 1020 PRINTS P-type cation-transporting ATPase superfamily signature 656 667 - -
Tsu04g02183 1020 PRINTS P-type cation-transporting ATPase superfamily signature 678 688 - -
Tsu04g02183 1020 PRINTS P-type cation-transporting ATPase superfamily signature 759 778 - -
Tsu04g02183 1020 PRINTS P-type cation-transporting ATPase superfamily signature 783 795 - -
Tsu04g02183 1020 Pfam Cation transporter/ATPase, N-terminus 123 191 IPR004014 -
Tsu04g02183 1020 PANTHER CALCIUM-TRANSPORTING ATPASE 2 1019 - -
Tsu04g02183 1020 SFLD p-type atpase 441 811 IPR044492 -
Tsu04g02183 1020 Gene3D - 146 342 - -
Tsu04g02183 1020 SUPERFAMILY Calcium ATPase, transduction domain A 245 339 IPR008250 -
Tsu04g02183 1020 CDD P-type_ATPase_Ca_PMCA-like 150 892 - -
Tsu04g02183 1020 SUPERFAMILY HAD-like 457 864 IPR036412 -
Tsu04g02183 1020 SUPERFAMILY Calcium ATPase, transmembrane domain M 123 1019 IPR023298 -
Tsu04g02183 1020 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Tsu04g02183 1020 SFLD Haloacid Dehalogenase 441 811 - -
Tsu04g02183 1020 Pfam Cation transporting ATPase, C-terminus 844 1013 IPR006068 -
Tsu04g02183 1020 ProSitePatterns E1-E2 ATPases phosphorylation site. 461 467 IPR018303 -
Tsu04g02183 1020 Gene3D - 17 77 - -
Tsu04g02183 1020 Gene3D - 174 1007 - -
Tsu04g02183 1020 Pfam Cation transport ATPase (P-type) 519 597 - -
Tsu04g02183 1020 PANTHER CATION TRANSPORTING ATPASE 2 1019 - -
Tsu04g02183 1020 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 730 843 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g02183 1020 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 211 493 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g02183 1020 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 551 704 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g02183 1020 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 116 1020 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02183 Tsu-Chr4 24148513 24152771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02183 1 1020 Primary Pumps ATPases AT4G37640 81.391 0.0 1704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02183 K01537 - gmx:100776926 1835.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02183 04 24148513 24152771 Tsu04g02183 04 24148513 24152771 ECH
Tsu05g00533 05 4325973 4332063 Tsu04g02183 04 24148513 24152771 PCT