Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02182 ATGGACACATCTTTCCTTTTATGCGATGATGAAGACCACACCTTCCTCTTCATGCACAACAACGATGACAATGAAAATATTACCATTAACTCGATGAACCAAAATCTCAATTCCAAATATGAAAAGGAACACATTGAGTATTTGTTTACACTTGAAAAGAGAAAGTTCCCATCCTTCAGTTATTGCTTCAAGTTCACCATAGGCCATGTTGAGTTCAACAGCACACGTATAAATGCCATTGACTACATTTTCAAAATACAGGAAAAACTTGGATTCAAGTTATGTACAGCTTATTTGTCAGTGACATACCTTGATCAGTTTCTTTTGAAGGAACACAAACACATCCATGAAGAGAGGTATGTTCAGCTATTATCCATGGCGTGCTTGTCTCTTTCCGCAAAGATGATGGAAGAGCATGATCTACCGCTTCTATTTAAATACATAACGGAAACATACGACGAGCAAGGTTTTGTTGACAAGCGATGTATTGGGGAGATGGAGGTAGAGGTTTTTTGTACATTGGAATGGGAATTGACAACTGTCACTCCTTTTGATTTTCTGCATTACTTTGTTTACCTGTTCTGTCCTGAATCTCCACCAGAACCATTGATCTCACAAGCTGTAGAACATGTTTTGGCTATCCTGAAAGATGTTAATTTGATGGATCATAGGCCATCCACTATTGCCTTGGCTGCCACATTGATGGTGGCTTTTGATGCTGCATTAACAAGAGAGATCATGGATCTGCGTATAGGTGAAATCTTATTGCAGCTAAATTTAGACAGTGAAGGTGTGGTTTTCTGTTACCATCTAATGCAGGAAAAAAGTACCGAGAGAATAAAGTTAAACAACCCTGACTCAACTTTGACAGCCCAATGGAGCTACACATCTGTTCTTGACCATTCTTCTGTTACTTCTTCTACAGTTAGGAGAAAGCTTGGTTTTGACAATAAAGAAAATTGTCCTACGCAAAGATCACGTTGTCCTTAG 990 0.3869 MDTSFLLCDDEDHTFLFMHNNDDNENITINSMNQNLNSKYEKEHIEYLFTLEKRKFPSFSYCFKFTIGHVEFNSTRINAIDYIFKIQEKLGFKLCTAYLSVTYLDQFLLKEHKHIHEERYVQLLSMACLSLSAKMMEEHDLPLLFKYITETYDEQGFVDKRCIGEMEVEVFCTLEWELTTVTPFDFLHYFVYLFCPESPPEPLISQAVEHVLAILKDVNLMDHRPSTIALAATLMVAFDAALTREIMDLRIGEILLQLNLDSEGVVFCYHLMQEKSTERIKLNNPDSTLTAQWSYTSVLDHSSVTSSTVRRKLGFDNKENCPTQRSRCP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02182 329 SUPERFAMILY Cyclin-like 35 178 IPR036915 -
Tsu04g02182 329 Gene3D - 47 241 - -
Tsu04g02182 329 CDD CYCLIN 75 170 IPR013763 -
Tsu04g02182 329 PANTHER CYCLINS 44 281 IPR039361 -
Tsu04g02182 329 Pfam Cyclin, N-terminal domain 45 178 IPR006671 -
Tsu04g02182 329 Gene3D - 58 179 - -
Tsu04g02182 329 PANTHER AMINO-TERMINAL DOMAIN CYCLIN 44 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02182 Tsu-Chr4 24146377 24147754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02182 49 285 Core Cell Cycle Gene Families AT1G70210 33.054 9.33e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02182 K18811 - gmx:100808000 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02182 04 24146377 24147754 Tsu04g02182 04 24146377 24147754 ECH
Tsu05g00535 05 4359653 4361134 Tsu04g02182 04 24146377 24147754 ECH