Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02179 ATGTCGCAGAAGTTTGGAAAAGCCACTCGCCGCCCTGGCGCTTCCTCCAAAGCTAGGGTTTATTCTGACATCAACGTCGTTCGCCCTAAAGAATATTGGGACTACGAAACCCTCACCGTTCAGTGGGGGGAGCAGGATGATTATGAGGTGGTGAGGAAGGTGGGTAGAGGGAAATACAGTGAGGTGTTTGAAGGTGTTCATTGTACTGATAATGAAAAATGTGTTATTAAGATCCTCAAACCTGTCAAGAAGAAGAAGATCAAGagggaaatcaaaatattacagAATCTTTGTGGAGGGCCCAATATTGTGAAGTTGCTTGACATTGTTAGAGACCAGCAGTCCAAGACCCCTAGTCTCATATTTGAATATGTCAATAACAGTGACTTTAAAGTACTCTATCCTACACTGTCAGACTATGATATACGATATTATATCTATGAACTTCTAAAGGCATTGGATTATTGCCATTCACAAGGAATCATGCATCGGGATGTAAAGCCCCATAATGTAATGATTGACCATTCGCAGCGTAAGCTTCGTCTTATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTCCGTGTGGCTTCAAGATATTTCAAAGGTCCAGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTGTGGAGTCTTGGTTGTATGTTTGCCGGGATGATATTCCGGAAGGAGCCATTCTTTTATGGACACGATAACTATGATCAACTGGTCAAGATAGCCAGGGTACTTGGAACGGATGAATTAAATACATATTTGAATAAGTACCGCATTGAGTTGGACCCGCATTTTGCAGCACTTATTGGGAGGCATAGCCGGAAGCCATGGCAAAGGTTCATTAATGTTGAAAATCAACACTTGACTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTACTGCGATATGATCACCAAGAGCGGCCCACTGCAAAAGAAGCCATGGCCCATCCATACTTCAATCCAATTAGAAACGCCGAAAGTAGCCGAGCACGTGCACATTGA 1044 0.4205 MSQKFGKATRRPGASSKARVYSDINVVRPKEYWDYETLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNSDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHSQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIARVLGTDELNTYLNKYRIELDPHFAALIGRHSRKPWQRFINVENQHLTVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPIRNAESSRARAH 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02179 347 SMART serkin_6 48 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02179 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Tsu04g02179 347 PANTHER BNAA04G13490D PROTEIN 2 339 - -
Tsu04g02179 347 PANTHER CASEIN KINASE II SUBUNIT ALPHA 2 339 IPR045216 GO:0004674|GO:0006468
Tsu04g02179 347 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Tsu04g02179 347 ProSiteProfiles Protein kinase domain profile. 48 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02179 347 CDD STKc_CK2_alpha 29 333 IPR045216 GO:0004674|GO:0006468
Tsu04g02179 347 Pfam Protein kinase domain 48 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02179 347 Gene3D Phosphorylase Kinase; domain 1 48 124 - -
Tsu04g02179 347 SUPERFAMILY Protein kinase-like (PK-like) 19 337 IPR011009 -
Tsu04g02179 347 Gene3D Transferase(Phosphotransferase) domain 1 125 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02179 Tsu-Chr4 24085237 24091555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02179 46 333 Core Cell Cycle Gene Families AT3G48750 32.333 6.83e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Tsu04g02179 Pkinase 9.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02179 K03097 - gmx:100817795 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02179 04 24085237 24091555 Tsu04g02179 04 24085237 24091555 ECH