Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02175 atgAGTTGCAATGGTTGCCGAGTTCTTCGCAAAGGCTGTAGCGAAACATGTATTCTACGACCTTGTTTGCAATGGATCGAAACACCAGAAGCTCAAGGTCACGCTACTGTTTTCGTAGCTAAATTCTTTGGTCGTGCTGGTCTCATGTCTTTCATTTCCAACGTTCCTGAACCGCAAAGACCagCTCTGTTTCAGTCTCTATTGTTTGAAGCATGTGGAAGAACGGTTAACCCTGTGAACGGTGCGGTGGGGCTTTTATGGACTGGAAACTGGCACGTGTGTCAGGCAGCGGTTGAGACGGTTCTTCGCGGCGGTGTTCTTAGACCTTTACCGGAGCTGACACTCATGGACGCGCCGCCTGTTGCTGCTGATGAAGCTTCTGAAGCAGAAGACGGTGGTGCAGACGCCATTTGGAGGATCCGAGATCCGAATCCGAATTTCCGGTTCACAAGCTCGCGATCTAATAATAAAGTCTCTTCTGGAGTTAAACGCCGACGATCGGAGGAGTTTGTGAAGGTTCCACCGGCGACTAATCTTGATCTCAGGCTTACACCTATTTTCCTGCAGAAAGAGATGGAGAATCACCGTCCAGGTTCGCCGTCGATGAATTCGGAGGAATCCGTTACAACGACGGCGTGTTTGGAGACTGGAATTGCAGATCACTTGGCTCACGGTGGTGATCGGAAAGTTCTCAACCTTTTCATATGA 708 0.4929 MSCNGCRVLRKGCSETCILRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGVLRPLPELTLMDAPPVAADEASEAEDGGADAIWRIRDPNPNFRFTSSRSNNKVSSGVKRRRSEEFVKVPPATNLDLRLTPIFLQKEMENHRPGSPSMNSEESVTTTACLETGIADHLAHGGDRKVLNLFI 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02175 235 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Tsu04g02175 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 235 - -
Tsu04g02175 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 235 - -
Tsu04g02175 235 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02175 Tsu-Chr4 24035629 24036819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02175 1 235 AS2 family AT4G37540 57.540 2.03e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu04g02175 LOB 8.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02175 - - gmx:100802764 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00551 05 4496591 4497951 Tsu04g02175 04 24035629 24036819 ECH
Tsu04g02175 04 24035629 24036819 Tsu04g02175 04 24035629 24036819 ECH
Tsu04g02175 04 24035629 24036819 Tsu05g00551 05 4496591 4497951 PCT