Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02173 ATGaacaaaaacaatcaaataCCAACTAAACCATGGTTTCCAACATCCAAAGCTTTAACTACCTTTGGTGACACAAACTGCATGGAACAGTTACTTGTTCATTGCGCAAACGCAATCGAAACAAACGATGTAACACTTGCTCAACAAATCCTTTGGGTTCTTAACAACATAGCACCACAAGATGGCGATTCAAATCAACGCTTAGCTTATAGTTTCCTAAGAGCCCTCACAAATCGCGCAGCGAAAACCGGTACCTGCAAAATGCTAGTAGAACAAGTTTATTCAAATGCTCATAACAATCTTACCATAGAAACTCATAGATTCTCAGTCATTGAACTAGCTAACTTTGTCGATTTAACACCTTGGCATCGATTCGGTTATGCAGCTGCTAATGCAGCCATTCTTGAAGCAACAGAAGGATTCTCAGTGATTCATATTGTTGATTTAAGTTCAACTCATTGCATGCAGATTCCTACATTAATCGATGCTATAGCCAATCGCCATGAAATTCCTCCATTAATCAAACTCACAGTTTCTGATCATGATAATAACATTGATCAAATTCCACCTAAACTTGATCTTTCTTATCAAGAATTAGGTTCTAAGTTGGTTAATTTCGCTAGGTCGAGAAACGTGACATTAGAATTCAGAGTAGTTTCTTCGAGTTACACAAACGGTTTCTCTTCTTTGATTGAACATTTGCGAGTTCAACGTATGGTTTATTCAGGTGAAGCTTTGATTATAAATTGTCACATGATGCTTCATTATATTCCAGATGAAACCCTATCAAATTCAAACTCTTATGTTTATGATTCTATGTCTTCTTCCGTTTCTACTACTACTGCTACTACTACTACGTCTCTGAGATCATTGTTTCTTACCGCGCTTCGAGGTTTAGATCCAACACTTGTAATTTTAGTAGATGAAGATGTTGATTTAACTTCTAATAACTTAGTTACTAGATTAAGGTCTGCATTTAATTATCTATGGATACCTTATGATACTGTGGACACTTTTCTGCCACGTGGAAGTAAACAAAGACAATGGTATGAAGCAGATATTTGTTGGAAGATTGAAAATGTGATAGCTCATGAAGGAGTTCAAAGAGTTGAGAGAGTTGAACCTATAGGAAAATGGGAACAAAGAATGAGAAATGCAAATTTTCAAGGGATTGGATTTGGTGAAGAATGTGTTGGTGAAGTGAAAGCTATGCTTGATGAACATGCTGCTGGTTGGGGATTGAAGAAAGAAGATGAATGTATTGTGCTTACTTGGAAAGGGCATAATGTTGTTTTTGCTTCTGCTTGGTTACCTGcttaa 1320 0.3629 MNKNNQIPTKPWFPTSKALTTFGDTNCMEQLLVHCANAIETNDVTLAQQILWVLNNIAPQDGDSNQRLAYSFLRALTNRAAKTGTCKMLVEQVYSNAHNNLTIETHRFSVIELANFVDLTPWHRFGYAAANAAILEATEGFSVIHIVDLSSTHCMQIPTLIDAIANRHEIPPLIKLTVSDHDNNIDQIPPKLDLSYQELGSKLVNFARSRNVTLEFRVVSSSYTNGFSSLIEHLRVQRMVYSGEALIINCHMMLHYIPDETLSNSNSYVYDSMSSSVSTTTATTTTSLRSLFLTALRGLDPTLVILVDEDVDLTSNNLVTRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGVQRVERVEPIGKWEQRMRNANFQGIGFGEECVGEVKAMLDEHAAGWGLKKEDECIVLTWKGHNVVFASAWLPA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02173 439 Pfam GRAS domain family 28 436 IPR005202 -
Tsu04g02173 439 PANTHER SCARECROW-LIKE PROTEIN 32 10 437 - -
Tsu04g02173 439 ProSiteProfiles GRAS family profile. 19 437 IPR005202 -
Tsu04g02173 439 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 437 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02173 Tsu-Chr4 23980833 23982152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02173 8 438 GRAS Transcription Factor Family AT3G49950 57.011 5.90e-174 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu04g02173 GRAS 3.2e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02173 - - cam:101509453 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02173 04 23980833 23982152 Tsu04g02173 04 23980833 23982152 ECH