Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02170 ATGGGTCGTTTTAATAATGTTATTCTTGTATGGTCACTCACATTAATGCTATGTTTTATTCCATATACCACTTTTGCTCAGCTTAGTCCAAATCATTATGCTAACATTTGTCCAAATGTTCAAAGCATTGTTAGATCAGTTGTTCAACAGAAATTTCAACAAACATTTGTTACTGTTCCTGCTACTCTTCGTCTCTTCTTTCATGATTGTTTTGTTCAgGGTTGTGATGCTTCGGTTTTGGTAGCATCAAGTGGAGGTAATCAAGCAGAGAAAGATAATCCTGATAATCTTTCATTAGCTGGTGATGGATTTGACACAGTGATCAAAGCTAAAGCAGCATTAGATGCTGTTCCACAGTGTAGAAACAAAGTTTCTTGTGCTGATATTCTTGCTTTAGCAACAAGAGATGTTGTTAATCTGGCTGGTGGACCATCTTATACAGTTGAATTGGGAAGATTTGATGGATTAGTTTCAAGATCTTCAGATGTAAATGGAAGGTTGCCTCAACCAGGCTTCAATTTGAACCAGCTTAATAGCTTATTTGCAGCCAATGGACTCACACAAACAGACATGATTGCCCTCTCAGGTAATTCATGGACCACATTTCAAATGAGTTCCATTACCGTATAG 630 0.3714 MGRFNNVILVWSLTLMLCFIPYTTFAQLSPNHYANICPNVQSIVRSVVQQKFQQTFVTVPATLRLFFHDCFVQGCDASVLVASSGGNQAEKDNPDNLSLAGDGFDTVIKAKAALDAVPQCRNKVSCADILALATRDVVNLAGGPSYTVELGRFDGLVSRSSDVNGRLPQPGFNLNQLNSLFAANGLTQTDMIALSGNSWTTFQMSSITV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02170 209 ProSiteProfiles Plant heme peroxidase family profile. 27 209 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g02170 209 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Tsu04g02170 209 PANTHER - 1 202 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g02170 209 Gene3D Peroxidase, domain 2 168 197 - -
Tsu04g02170 209 Pfam Peroxidase 44 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g02170 209 PANTHER PEROXIDASE 50-RELATED 1 202 - -
Tsu04g02170 209 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g02170 209 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g02170 209 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g02170 209 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g02170 209 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g02170 209 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g02170 209 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g02170 209 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g02170 209 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g02170 209 Gene3D - 31 167 - -
Tsu04g02170 209 SUPERFAMILY Heme-dependent peroxidases 27 196 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02170 Tsu-Chr4 23968663 23970698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02170 1 196 Peroxidase AT5G67400 67.347 4.26e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02170 K00430 - gmx:100817540 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02170 04 23968663 23970698 Tsu04g02170 04 23968663 23970698 ECH
Tsu04g02170 04 23968663 23970698 Tsu05g00553 05 4515047 4517803 PCT