Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02169 ATGTCTCTTTTACTCGTCAACATCCAAGATCTTCACGATCTTTCTATCAAAGATCTGAGTGAAAATGGGAGCGAAGAAGAAGAGAATCACTCTGTGGGATTTGGAAATCATGGTGCAATATGCGCTATATGCTTAGACAAGATAGCACTGCAAGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTATTGTGTAACGTGCATCCTTCGCTGGGCCACATACAATCAGAAAGTTACCTGCCCTCAGTGCAAACTTCCATTTGAGTTCCTCACTGTCCATCGCACACTTGATGGAAGTATTCAGGATTACATGGTGGAAGAAAGCGTTTGCCTGCTACTTCGGGCTAAGTGGTTTGAGCCTTTACCTGTTGTTGAAGAGCGTGCGATTGAGGAAGATATCTATTTTGAGGAAATAGAAGATTACTATTATCAATACGAAGAAGCTGATGATGATCTAGATGACGAAGTTTACTATGGAGGTGGTTCAGCAAGTGTCCGGATTGGCAACCGTAGATGGGAGAGACAACGGTTATGTAAGGGCTGGGCGTCAAGAAGCACGGCCAGTCCATCGACCAAGTTTCCAGGATTCAGGAGGAGCAAGCTCATCACGCGAGCCAAAGAAGAAAGAGCAAGAGGAGTCAAAACGTATGACGGGGAGACGGGCGAAGAGGGCACTGAAAAGGGAAGCTGCTGA 693 0.4574 MSLLLVNIQDLHDLSIKDLSENGSEEEENHSVGFGNHGAICAICLDKIALQETALVKGCEHAYCVTCILRWATYNQKVTCPQCKLPFEFLTVHRTLDGSIQDYMVEESVCLLLRAKWFEPLPVVEERAIEEDIYFEEIEDYYYQYEEADDDLDDEVYYGGGSASVRIGNRRWERQRLCKGWASRSTASPSTKFPGFRRSKLITRAKEERARGVKTYDGETGEEGTEKGSC 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02169 230 SMART ring_2 41 83 IPR001841 -
Tsu04g02169 230 Pfam Ring finger domain 41 84 IPR001841 -
Tsu04g02169 230 SUPERFAMILY RING/U-box 40 91 - -
Tsu04g02169 230 MobiDBLite consensus disorder prediction 207 230 - -
Tsu04g02169 230 ProSitePatterns Zinc finger RING-type signature. 59 68 IPR017907 -
Tsu04g02169 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 110 IPR013083 -
Tsu04g02169 230 ProSiteProfiles Zinc finger RING-type profile. 41 84 IPR001841 -
Tsu04g02169 230 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 192 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02169 4 189 C3H Transcription Factor Family AT5G12310 52.688 2.69e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02169 - - lja:Lj0g3v0250279.1 216.083