Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu04g02167 | ATGGCTGAACCAAACATGCAAATGTCACTTTCAAGTTCATCAAGTGATTCATCTGACCAAGAAACACCtttcaccaccaccacaacaaaTCAACAACCACCAACAACCACCATGATAGGTGGTTCATCTTACCAACAAACACCATCCTTAACCAATTCAccaaaccaacaacaacaacaacaacaacccatTTCACCACCATACAAAAAGCCACGTGGCAGACCACCAGGTtcaaaaaacaaaccaaaaccaccATTAGTAATAACACAAGACAATGAACAAGCTATGAAACCAGTAGTTATTGAAGTAGCTTCTGGTACTGATGTTGTTGAAGCTATTATACAATTTGCTGTTCGTTCTACTTCATGTCTTACTGTTCTTAGTGCTTCTGGTACTATTGCTGTTGCTACTCTTCATTACCCTCTTTGTCGTTCACCTGCTTTTACTCTTCATGGTCCTTTTTCATTGATGAATTTGACTGGTACTTTTTTGtatcctccaccaccaccacttcctcctgtttctctttctcttcctaTTGGTCCTTCTACTAACCCTAATCCTGTTGAATCTATGCCGGGGGCTTTGAGTTTTGGTATTACTCTTGCTGGTTTACAAGGACAAGTTTTTGGTGGGATTATTGGTGGAAAAGTTATTGCTGGTGGTGAAGGTGTTAAGATTACTGTTTCTTTGTTTAAGAATCCTGAATTTCATAGAGCTGGTGGTGTTATTCTTGGagctgatgatgatgatgatgatgatgttggtggtggtgatgataATAATGGTAATGGAAATGGTGGTGGTGATCAAGGTGCTAGTGGTAGTGGTAgtgctggtggtggtggtggtgagaATGTGTCTAGTTTCGATGCGCATAATCCAATGCCTTTGAATCTAGCACATTCTGATCAAAACTTCGTGCCGTGGAACCatccttaa | 942 | 0.3153 | MAEPNMQMSLSSSSSDSSDQETPFTTTTTNQQPPTTTMIGGSSYQQTPSLTNSPNQQQQQQQPISPPYKKPRGRPPGSKNKPKPPLVITQDNEQAMKPVVIEVASGTDVVEAIIQFAVRSTSCLTVLSASGTIAVATLHYPLCRSPAFTLHGPFSLMNLTGTFLYPPPPPLPPVSLSLPIGPSTNPNPVESMPGALSFGITLAGLQGQVFGGIIGGKVIAGGEGVKITVSLFKNPEFHRAGGVILGADDDDDDDVGGGDDNNGNGNGGGDQGASGSGSAGGGGGENVSSFDAHNPMPLNLAHSDQNFVPWNHP | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu04g02167 | 313 | CDD | DUF296 | 97 | 221 | IPR005175 | - | |
| Tsu04g02167 | 313 | MobiDBLite | consensus disorder prediction | 299 | 313 | - | - | |
| Tsu04g02167 | 313 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 10 | 313 | IPR014476 | GO:0003680 | |
| Tsu04g02167 | 313 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 94 | 239 | - | - | |
| Tsu04g02167 | 313 | MobiDBLite | consensus disorder prediction | 1 | 92 | - | - | |
| Tsu04g02167 | 313 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 97 | 222 | IPR005175 | - | |
| Tsu04g02167 | 313 | MobiDBLite | consensus disorder prediction | 68 | 82 | - | - | |
| Tsu04g02167 | 313 | Gene3D | - | 96 | 249 | - | - | |
| Tsu04g02167 | 313 | MobiDBLite | consensus disorder prediction | 243 | 313 | - | - | |
| Tsu04g02167 | 313 | ProSiteProfiles | PPC domain profile profile. | 93 | 235 | IPR005175 | - | |
| Tsu04g02167 | 313 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 10 | 313 | - | - | |
| Tsu04g02167 | 313 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
| Tsu04g02167 | 313 | PIRSF | ESCAROLA | 5 | 311 | IPR014476 | GO:0003680 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu04g02167 | Tsu-Chr4 | 23912290 | 23913231 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu04g02167 | 69 | 293 | AT-hook Motif Nuclear Localized (AHL) Family | AT5G49700 | 39.316 | 5.09e-40 | 139 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu04g02167 | - | - | cam:101503818 | 188.348 |