LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g02167	ATGGCTGAACCAAACATGCAAATGTCACTTTCAAGTTCATCAAGTGATTCATCTGACCAAGAAACACCtttcaccaccaccacaacaaaTCAACAACCACCAACAACCACCATGATAGGTGGTTCATCTTACCAACAAACACCATCCTTAACCAATTCAccaaaccaacaacaacaacaacaacaacccatTTCACCACCATACAAAAAGCCACGTGGCAGACCACCAGGTtcaaaaaacaaaccaaaaccaccATTAGTAATAACACAAGACAATGAACAAGCTATGAAACCAGTAGTTATTGAAGTAGCTTCTGGTACTGATGTTGTTGAAGCTATTATACAATTTGCTGTTCGTTCTACTTCATGTCTTACTGTTCTTAGTGCTTCTGGTACTATTGCTGTTGCTACTCTTCATTACCCTCTTTGTCGTTCACCTGCTTTTACTCTTCATGGTCCTTTTTCATTGATGAATTTGACTGGTACTTTTTTGtatcctccaccaccaccacttcctcctgtttctctttctcttcctaTTGGTCCTTCTACTAACCCTAATCCTGTTGAATCTATGCCGGGGGCTTTGAGTTTTGGTATTACTCTTGCTGGTTTACAAGGACAAGTTTTTGGTGGGATTATTGGTGGAAAAGTTATTGCTGGTGGTGAAGGTGTTAAGATTACTGTTTCTTTGTTTAAGAATCCTGAATTTCATAGAGCTGGTGGTGTTATTCTTGGagctgatgatgatgatgatgatgatgttggtggtggtgatgataATAATGGTAATGGAAATGGTGGTGGTGATCAAGGTGCTAGTGGTAGTGGTAgtgctggtggtggtggtggtgagaATGTGTCTAGTTTCGATGCGCATAATCCAATGCCTTTGAATCTAGCACATTCTGATCAAAACTTCGTGCCGTGGAACCatccttaa	942	0.3153	MAEPNMQMSLSSSSSDSSDQETPFTTTTTNQQPPTTTMIGGSSYQQTPSLTNSPNQQQQQQQPISPPYKKPRGRPPGSKNKPKPPLVITQDNEQAMKPVVIEVASGTDVVEAIIQFAVRSTSCLTVLSASGTIAVATLHYPLCRSPAFTLHGPFSLMNLTGTFLYPPPPPLPPVSLSLPIGPSTNPNPVESMPGALSFGITLAGLQGQVFGGIIGGKVIAGGEGVKITVSLFKNPEFHRAGGVILGADDDDDDDVGGGDDNNGNGNGGGDQGASGSGSAGGGGGENVSSFDAHNPMPLNLAHSDQNFVPWNHP	313

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g02167	313	CDD	DUF296	97	221	IPR005175	-
	Tsu04g02167	313	MobiDBLite	consensus disorder prediction	299	313	-	-
	Tsu04g02167	313	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15	10	313	IPR014476	GO:0003680
	Tsu04g02167	313	SUPERFAMILY	AF0104/ALDC/Ptd012-like	94	239	-	-
	Tsu04g02167	313	MobiDBLite	consensus disorder prediction	1	92	-	-
	Tsu04g02167	313	Pfam	Plants and Prokaryotes Conserved (PCC) domain	97	222	IPR005175	-
	Tsu04g02167	313	MobiDBLite	consensus disorder prediction	68	82	-	-
	Tsu04g02167	313	Gene3D	-	96	249	-	-
	Tsu04g02167	313	MobiDBLite	consensus disorder prediction	243	313	-	-
	Tsu04g02167	313	ProSiteProfiles	PPC domain profile profile.	93	235	IPR005175	-

Showing 1 to 10 of 13 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g02167	Tsu-Chr4	23912290	23913231	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g02167	69	293	AT-hook Motif Nuclear Localized (AHL) Family	AT5G49700	39.316	5.09e-40	139

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g02167	-		-	cam:101503818	188.348

Showing 1 to 1 of 1 entries