Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02165 ATGGCAATTCAACACTCTATCTTTCTACTTGCTTTTTTTCTTCGATTCTCATCACTACAATTGCCCTCACTTGCATATGTTCACCAAAACACATACTTCATCAATTGTGGACCACACCAAGTTAATCAAAATAACAATATCTATATTGGTGAATCAAACAGTAATTACCCTAAAACAAGTTTCAGCAGCAATAGCTACACAGAAACCAATCAATCAACAGTGCCTTCACTTCTCTACCAAACAGCAAGAATCTTCCATTCTGAATCTTCCTATGAATTTGATACCGAACCAAACAACACCTACATGGTACGTTTCCATTTCTTTTCATTTGATTCACCAATTAACCTGTACACTGCAAAATTCAACGTTTCCATTCCAGGTTTCTCTCTGTTACAAAACTTCGACGCAAAAAACACTACAGACCCTGGCTTAATAAAAGAGTATTTCgttaaaatcattcaaaaaagaTTCAAAATAATGTTCACACCTCAAACATCATCGTTCGCATTGGTTAATGCGATAGAACTCTTTATGCTCCCAACTCATTTAATCCCCAATTCAATCCCACGTTTCAGTTACACCGGTTCTACTGGTCGAGGCTTAACTACTTATAGTCACGATTTCCTCTCACGAGCTTTGGAAACCAAACACCGTCTTAATGTTGGTGGCAATAACTGTGAAGACATACAAACCGATAACTTATCAAGAGAATGGTTACCAGATGACAGTTATATAACTGATCCACAAAACGCTAAGTATAGTCCCTTTTTTGGAGGTACACTTAAACGCAAGGcagatgatgaatctgatggtttATATTCAGATCAATATACTGCTCCAGATGTTATTTATGAAACTGCCAGAGAGAGTAAAAATGGTTCTAACGGTTTAAACATAAGTTGGAGTGTTCCTGTGGAGAAGAATACAGATCATTTCCTTAGGCTTCACTTTTGTGACATTTTTAATGTACAGAGTCTACTTACAACCTTCTTTCTCTACATTTATGACCAGCTTGTTATTTCAGATGTAAATAGTGGCATAGATGTGTCTACTccttattattatgattttgtgGTTCATTCGGATGGCTCTGGGCTATTGAATGTTAGTGTGGTACCTAATACAACAGTTGCTAAACCGAAGGCGTCTTTAAACGGGCTAGAACTAATGAAAGTGATCGGATTGTCCAGTTCAATTCCCCCAGATGATTTGGATTCGAAGAAGATTAGTCTTCCTGCGGTGGTGGGTTCGGTCGTTGGAGGTTTAGTGTTGGTTTCTGTTATGGTGGTTTTGTTTATTTGGATTAGTAAAATTAGGAAACAAAAGCATGTTGAAAATTCCAATATTGTGAAGATTCCAACTACTGCAAGAGGGTTTTCTCATAGCAGAAAAACAACTCAAGGCTCCACTTTACCTAACATAAACCTTGGCCTGAAAATCTCCTTGATTGATCTTCAATTTGCAACAGAGAATTTCGATGTGAAGAGGATAATTGGAATTGGTGGTTTTGGAAATGTTTATAAGGGAGTTCTCAAGAATGGAATGAGTGTAGCAGTGAAAAGATGTGTGACGGGGTTTGGTCAAGGATTTCCTGAATTTCAAACTGAGATAATGATTTTGTCCAAGATTCGTCACATACATCTTGTTTCTTTAGTAGGGTATTGTGATGAAAGGGATGAGATGATACTTGTTTACGAGTACATGGAAAAGGGGACACTTAGAGAGAATTTGTACAATACAAATTTGCCTTGTTTGACTTGGAAGCAAAGGCTTGAGATTTGTATTGGTGCAGCTAGAGGTCTTCATTACCTTCACAAAGGTTCAGCTGGTGGAATCATTCACCGTGACGTAAAATCCACAAACATATTGCTTGATGAGAATCTTGTAGCCAAGGTTGCTGATTTTGGTCTTTCAAGAAGTGGTCCTCTTGATCAGCATTCTCATGTCAGCACATGTGTTAAAGGAACTTTTGGGTATCTTGATCCTGATTACATTAGATCACAAAAACTCTCAGAAAAATCTGATGTATATTCTTTTGGGGTGGTTCTACTTGAAGTGTTGTGTGCAAGACCGGCCATCGATCTGTCTTGTCCAAGTGAACAAGTCAATTTGGCCAAGTGGGGATTGCATTGCAAAGAGAAAGGAATACTCGAAGAGATCATTGATCCTTTCATCGATTATGGTTGTGATAGGCCAACAATGGTTGATGTGTTGTGGGACTTGGAATATGCTTTGCAACTTCAGATAGAACCACATGATGAATCTGAAACTACAACATCAACAATGCAAGATAGAATTTCATGTGAAGCTAATCAAGGCACAACAATAAACTCGCAAGTGTCTACACCGGAGAGTCGTTTTGTCAGATAG 2370 0.373 MAIQHSIFLLAFFLRFSSLQLPSLAYVHQNTYFINCGPHQVNQNNNIYIGESNSNYPKTSFSSNSYTETNQSTVPSLLYQTARIFHSESSYEFDTEPNNTYMVRFHFFSFDSPINLYTAKFNVSIPGFSLLQNFDAKNTTDPGLIKEYFVKIIQKRFKIMFTPQTSSFALVNAIELFMLPTHLIPNSIPRFSYTGSTGRGLTTYSHDFLSRALETKHRLNVGGNNCEDIQTDNLSREWLPDDSYITDPQNAKYSPFFGGTLKRKADDESDGLYSDQYTAPDVIYETARESKNGSNGLNISWSVPVEKNTDHFLRLHFCDIFNVQSLLTTFFLYIYDQLVISDVNSGIDVSTPYYYDFVVHSDGSGLLNVSVVPNTTVAKPKASLNGLELMKVIGLSSSIPPDDLDSKKISLPAVVGSVVGGLVLVSVMVVLFIWISKIRKQKHVENSNIVKIPTTARGFSHSRKTTQGSTLPNINLGLKISLIDLQFATENFDVKRIIGIGGFGNVYKGVLKNGMSVAVKRCVTGFGQGFPEFQTEIMILSKIRHIHLVSLVGYCDERDEMILVYEYMEKGTLRENLYNTNLPCLTWKQRLEICIGAARGLHYLHKGSAGGIIHRDVKSTNILLDENLVAKVADFGLSRSGPLDQHSHVSTCVKGTFGYLDPDYIRSQKLSEKSDVYSFGVVLLEVLCARPAIDLSCPSEQVNLAKWGLHCKEKGILEEIIDPFIDYGCDRPTMVDVLWDLEYALQLQIEPHDESETTTSTMQDRISCEANQGTTINSQVSTPESRFVR 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02165 789 SUPERFAMILY Protein kinase-like (PK-like) 481 759 IPR011009 -
Tsu04g02165 789 Gene3D Phosphorylase Kinase; domain 1 448 567 - -
Tsu04g02165 789 ProSiteProfiles Protein kinase domain profile. 492 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02165 789 PANTHER OS07G0166700 PROTEIN 23 760 IPR045272 GO:0004714|GO:0006468
Tsu04g02165 789 CDD STKc_IRAK 498 742 - -
Tsu04g02165 789 Pfam Protein tyrosine and serine/threonine kinase 494 689 IPR001245 GO:0004672|GO:0006468
Tsu04g02165 789 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Tsu04g02165 789 SMART serkin_6 492 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02165 789 Pfam Malectin-like domain 62 392 IPR024788 -
Tsu04g02165 789 Gene3D Transferase(Phosphotransferase) domain 1 568 769 - -
Tsu04g02165 789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Tsu04g02165 789 Gene3D - 212 392 - -
Tsu04g02165 789 Gene3D - 27 179 - -
Tsu04g02165 789 PANTHER BNAC03G27170D PROTEIN 23 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02165 Tsu-Chr4 23877986 23886023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02165 26 761 Receptor kinase-like Gene Family AT2G23200 42.640 5.00e-180 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Tsu04g02165 Malectin_like 2.1e-27 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02165 - - mtr:MTR_4g095012 921.768