Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02149 ATGTATCCAAACCCACAAGAACAATCACAACCACTATTAGTGCAACAACACCAAGAAGATGAAGAGCCACAAGAAACAGCTTATGATTCATCTGAAAAGATAGTAGTAGTTGGAATTAATGAATCAACAAATTGGGGTACCTCAGTTCCACCATTTTCATGGAAGAAACTATGGAGATTCACAGGTCCTGGTTTTCTAATGAGCATAGCGTTTTTGGATCCAGGGAATTTAGAAGGAGACCTTCAAGCTGGTGCAATTGCTGGGTATTCTTTGTTATGGCTTCTTATGTGGGCTACAGCAATGGGGCTTTTGATTCAGCTTTTGGCAGCTAGACTTGGTGTTGCTACAGGGAAGCATTTGGCTGAGCTTTGTAGGGAGGAGTACCCTAGATGGGCTAGGAATGTTCTTTGGGTTATGGCTGAGTTTGCTCTTATTGGTTCTGATATACAAGAGGTTATTGGTAGTGCTATTGCTATTAGGATTCTTAGTAATGGGGTTGTTCCTCTTTGGGGTGGTGTTATTATTACTGCTCTTGATTGttttatttttctctttcttgagAACTATGGTGTGAGATCATTGGAGGCTTTTTTTGCTGTTCTCATTGGCATAATGGCAGTTGCTTTTGGTTGGATGTTTAGTGAGGCAAAGCCAAGTGGCAAGGAACTTCTAGTTGGCATTTTTGTTCCAAAACTAAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTGGGCTGTCTTATAATGCCTCACAATGTGTTCTTGCATTCTGCTCTTGTTCAATCAAGGCAAGTTGATCACAGCAACCAAGGCCGAGTTCAAGAAGCGCTAAATTATTTCTCAATAGAGTCTACGCTTGCCTTGATAGTCTCCTTTATTATCAACATATTTGTCACAGCTGTGTTTGCGAAAGGGTTTTATGGTAAAGAAACAGCGAATAGTATTGGCCTTGTAAATGCGGGACAGTATCTTCAAGATACTTATGGAGGTGGAATGTTTCCGATATTGTATATATGGGGTATTGGATTGTTAGCAGCTGGTCAAAGTAGCACTATAACCGGTACTTATGCTGGACAATTTATCATGGGAGGTTTTCTAAATTTAAGGTTGAAGAAATGGATGAGGGCGTTGATTACTCGAAGTTTTGCAATAGTCCCAACTATGATAGTCGCTCTTATATTCGATGCTACTGAGGATTCACTAGATGTTCTAAATGAGTGGCTTAATGTTCTTCAGTCGGTACAAATCCCCTTTGCACTTATTCCTTTGCTTTGTTTGGTGTCAAAGGAACAGATAATGGGCACTTTCAAAATTGGCACTGTCCTTAAGATTACTTCTTGGTGTGTAGCTGCTCTTGTGACAGTGATCAATGGTTATCTTTTGATGGAATTTTTCTCAGCTGAAGTGAATGGAATAATAGTTGGAGCTATAGTGTGTTTAGTGACTGCTGCATATGTTGCATTCATAATATATCTTATTTTGAGGGCTACTAGGAAGTAA 1500 0.394 MYPNPQEQSQPLLVQQHQEDEEPQETAYDSSEKIVVVGINESTNWGTSVPPFSWKKLWRFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLAARLGVATGKHLAELCREEYPRWARNVLWVMAEFALIGSDIQEVIGSAIAIRILSNGVVPLWGGVIITALDCFIFLFLENYGVRSLEAFFAVLIGIMAVAFGWMFSEAKPSGKELLVGIFVPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDHSNQGRVQEALNYFSIESTLALIVSFIINIFVTAVFAKGFYGKETANSIGLVNAGQYLQDTYGGGMFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSFAIVPTMIVALIFDATEDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGTVLKITSWCVAALVTVINGYLLMEFFSAEVNGIIVGAIVCLVTAAYVAFIIYLILRATRK 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02149 499 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 55 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu04g02149 499 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 18 496 - -
Tsu04g02149 499 Pfam Natural resistance-associated macrophage protein 78 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu04g02149 499 PRINTS Natural resistance-associated macrophage protein signature 136 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu04g02149 499 PRINTS Natural resistance-associated macrophage protein signature 166 185 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu04g02149 499 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu04g02149 499 PRINTS Natural resistance-associated macrophage protein signature 240 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu04g02149 499 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu04g02149 499 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu04g02149 499 PRINTS Natural resistance-associated macrophage protein signature 409 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu04g02149 499 MobiDBLite consensus disorder prediction 1 27 - -
Tsu04g02149 499 Hamap Divalent metal cation transporter MntH [mntH]. 42 465 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu04g02149 499 MobiDBLite consensus disorder prediction 1 17 - -
Tsu04g02149 499 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 18 496 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02149 Tsu-Chr4 23726097 23728992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02149 50 495 Inorganic Solute Cotransporters AT2G23150 80.045 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02149 K21398 - gmx:100812381 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02149 04 23726097 23728992 Tsu04g02149 04 23726097 23728992 ECH
Tsu05g00570 05 4658273 4662005 Tsu04g02149 04 23726097 23728992 PCT