Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02148 ATGAAGCATAAGGTTAATAGAGGACATAAGTTCTTTGGGTGGATGGCCAGAGTTGATGATTATGAAAATCATCAACTTGGCAATTACCTACAAGATCACACCACTCTTGTATCTAAAAAAGAAGCCGAGCTTCATCGGAAGGAAAAGAAGCGTGTGAGTGGCTTGCCGGACAACAAGGAACCTGGAACTTCTGAGGCTGGTGGTGAGTTGGAACAAaGAATCAAACAAGACATGTCTATCATGAAAATAGctcaaaaacaccaaaatgctCAATCATCAAAATCTCTTCACAAAAAGTCATACGCATGCAACTTCTGCATGAGAAAGTTTTACAGTTCACAAGCCTTAGAAGGACACCAAAATGCAcacaaaagagaaagagaagcAGCAAGAAAATTCCAATTATCTCATAATTCTTTGGTGGCAAGGTCACTAGCAATCAAGCCTCACTCTCTTGTGCACAAACAAAGTAGAGAAAGAACTGCTACTATGGTGGCTCAATTCAATGTTAATGATGCAATGGCATGGACACCCTTGTTCTTGAACATGGTGTTGATTTTGTATGGCATGGAAGCTTTCGAATAG 585 0.3744 MKHKVNRGHKFFGWMARVDDYENHQLGNYLQDHTTLVSKKEAELHRKEKKRVSGLPDNKEPGTSEAGGELEQRIKQDMSIMKIAQKHQNAQSSKSLHKKSYACNFCMRKFYSSQALEGHQNAHKREREAARKFQLSHNSLVARSLAIKPHSLVHKQSRERTATMVAQFNVNDAMAWTPLFLNMVLILYGMEAFE 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02148 194 MobiDBLite consensus disorder prediction 40 56 - -
Tsu04g02148 194 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Tsu04g02148 194 Gene3D Classic Zinc Finger 70 163 - -
Tsu04g02148 194 PANTHER ZINC FINGER PROTEIN 4-LIKE 54 182 - -
Tsu04g02148 194 Coils Coil 30 50 - -
Tsu04g02148 194 MobiDBLite consensus disorder prediction 40 70 - -
Tsu04g02148 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Tsu04g02148 194 SUPERFAMILY beta-beta-alpha zinc fingers 97 128 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02148 Tsu-Chr4 23714023 23715113 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02148 93 157 C2H2 Transcription Factor Family AT5G10970 42.683 4.82e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02148 - - gmx:100795890 122.864