Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02133 ATGGATGCTGGTGGGGCATGGTCAGATGATAACAGCCAACAATTGGAAGGAACTATTCACTTTCGGAAGCTTGTTTCCAATGCCAACAACCCTAAAATTGATGAAGTTATTCAATCTGGTGTTGTTCCTCGTTTGGTTGAATTTCTAGCTAGGGATGATTTCCCTCGACTTCAGGTGGAGGCTGCTTGGGTAATCACAAACATAGCATCCGGAACTTCTGAGGACACTAAGGTGGTAATTGATCATGGGGCAGTGCCGATATTGGTTAAGTTACTTAGTTCACCTGATGATGATGTTCGGGAACAGGCTGTATGGGCATTGGCTAACGTTGCCGGTGATTCCCCTAGTTGTCGTGATCTTGTTCTCAGTCACGGTGCCCTGATCCCGCTGTTGTCCCAATTTAATGATCAAGCAAAGTCTTCTATGCTTAGACTTGCGGTGTGGACCCTGTCAAACTTTTGCCGGGGCAAGCCACAACCCCCATTTGATCAGGTGAGGCCAGCGCTTCCCGCTCTCGCgcgtttgatttttttggacgATATAGAAGTTATGACAGATGCATGTTGGGCACTCTCATATCTTTCTGATGGAACAAATGACAAAATTCAAGCGGTGATTGAGGCCGGTGTATGTGGTAGACTAGTGGAGCTCCTTCGGAACCCATCTCCTTCAGTGGTGGTTCCAGCACTTTGCACGGTGGGCAATATTGTTGTTATCAATCATCGTCCACTCCAATGCCTTTTAAGGTTGTTGACCCATGATCAAATGAACTGTATTAAGAAATCCGCTTGTAGGACTATATCAAACATTACAGCTGGAAATAGAGAGCACTTACAGGCTGTTATTGAAGCTGATTTGATTGCTGCGATGATCAATCTTTATCGAAATGCCGAGTCTgacattaaaatagaaattgcaTGGGCACTCTCTAATGTTGCATCTAACGCTACCGATGAGCAAATCAAGAACATGGTGAACTTGGATTACATTAAGCCCCTATGCGATTTTCTTGTTTGCCCTAATCCAAGAACTGTCACTGTCTGTTTAAAAGGTCTtgagaatattttaaaggttgcAGAAGCGGAGAAAAGCTCTGGTAACACGAGATATGCCAACTTGTATGTTCAGATGATAGATGATGTTGGGGGATTGGAAAAGATGGAAAATTTGAAGAGTCATGACGACACTAAAATTTCCGAGAAAGCTGTTAAAATCATCAAGAGCATTGGAGGCAATGACCTTTCGGTCCCATCCGGTGGATTCAACTGTTTATAA 1275 0.422 MDAGGAWSDDNSQQLEGTIHFRKLVSNANNPKIDEVIQSGVVPRLVEFLARDDFPRLQVEAAWVITNIASGTSEDTKVVIDHGAVPILVKLLSSPDDDVREQAVWALANVAGDSPSCRDLVLSHGALIPLLSQFNDQAKSSMLRLAVWTLSNFCRGKPQPPFDQVRPALPALARLIFLDDIEVMTDACWALSYLSDGTNDKIQAVIEAGVCGRLVELLRNPSPSVVVPALCTVGNIVVINHRPLQCLLRLLTHDQMNCIKKSACRTISNITAGNREHLQAVIEADLIAAMINLYRNAESDIKIEIAWALSNVASNATDEQIKNMVNLDYIKPLCDFLVCPNPRTVTVCLKGLENILKVAEAEKSSGNTRYANLYVQMIDDVGGLEKMENLKSHDDTKISEKAVKIIKSIGGNDLSVPSGGFNCL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02133 424 PANTHER IMPORTIN ALPHA 4 408 - -
Tsu04g02133 424 SMART arm_5 114 155 IPR000225 GO:0005515
Tsu04g02133 424 SMART arm_5 198 238 IPR000225 GO:0005515
Tsu04g02133 424 SMART arm_5 29 70 IPR000225 GO:0005515
Tsu04g02133 424 SMART arm_5 157 196 IPR000225 GO:0005515
Tsu04g02133 424 SMART arm_5 72 112 IPR000225 GO:0005515
Tsu04g02133 424 SMART arm_5 274 314 IPR000225 GO:0005515
Tsu04g02133 424 SMART arm_5 317 357 IPR000225 GO:0005515
Tsu04g02133 424 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 83 125 IPR000225 GO:0005515
Tsu04g02133 424 SUPERFAMILY ARM repeat 8 409 IPR016024 -
Tsu04g02133 424 Gene3D - 3 408 IPR011989 -
Tsu04g02133 424 PANTHER IMPORTIN SUBUNIT ALPHA 4 408 - -
Tsu04g02133 424 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 40 83 IPR000225 GO:0005515
Tsu04g02133 424 Pfam Atypical Arm repeat 372 407 IPR032413 -
Tsu04g02133 424 Pfam Armadillo/beta-catenin-like repeat 73 111 IPR000225 GO:0005515
Tsu04g02133 424 Pfam Armadillo/beta-catenin-like repeat 199 237 IPR000225 GO:0005515
Tsu04g02133 424 Pfam Armadillo/beta-catenin-like repeat 114 155 IPR000225 GO:0005515
Tsu04g02133 424 Pfam Armadillo/beta-catenin-like repeat 29 70 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02133 Tsu-Chr4 23572552 23576118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02133 55 320 U-box Gene Family AT3G46510 24.382 3.80e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02133 K15042 - gmx:100808498 600.127