Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02128 ATGGCAATGGCAGCTTTTGCGTCGATATTTATGGGAAATTCTTTGGAAGGAGGGTTACTTCTTGCAATGTTTAATCTTGCACATATAGCTGAAGAGTATTTCACTAGCCGTTCAATGGTTGATGTTAAAGAGTTGAAGGAGAACAATCCAGAGTTTGCACTTGTTCTTGATACAAAAGATGACAAACTTCCTAATACATTTGATTTGGCATACAAGAGGGTTCCTGTCCATGATATAATTGTAGGATCATATGTCCTTGTTGGTGCCGGAGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCAAGGAGGTGCCACCATTACCATTGAGCACTTGACAGGGGAAGTCAAACCTCTGGAGGCTAAGGTTGGAGATAGAGTTCCTGGCGGTGCAAGGAACTTAGATGGGAGAATAATTGTGAAGGTAACAAAGACATGGAAGGAATCAACTCTAAGCAAAATTGTGCAGTTGACTGAAGAAGCTCAGTTGAACAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAAAATTACAGCAAAGTTGTAGTGGTGTTATCAATTGCTATTGCTGTTCTTGGACCACTTGTATTTAAGTGGCCATTCATTAGTACACCAGCTTGCAGAGGTTCTATTTACAGAGCTTTAGGGCTCATGGTTGCAGCATCACCGTGTGCGTTGGCTGTGGCTCCATTGGCATATGCCACAGCAATCAGCTCCTGTGCGAAAAAGGGCATACTACTCAAAGGTGGACATGTTCTAGATGCGCTAGCTTCATGCCATACCATTGCATTTGATAAAACAGGGACATTGACTACTGGTGGACTTATATTCAAGGCAATTGAGCCCATTTATGGTCATGACATCAGAAATAGGGAATCAATCATTTCTTCCTGCTGCATTCCTACATGTGAAAAGGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGCACTACCCACCCCATCGGAAGGGCTGTGGTTGACCATAGTGAAGGGAAAGACCTCCCTTCTGTTTCtgttgaaaattttgaataCTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAGCATTGAGtCAGGAACTGCAGGTGCTAAACTATTGCAAGCATCACTTGGGTCTATAGATTTCATCACTTCATTTTGTCAATCTGAAAATGAATCAAAAAAGATCAAGGAAGCTATTAATGCATCTTCTTATGGAAGTGAATTTGTTCATGCTGCcctttcaataaataaaaagGTAACATTGATTCATCTGGAGGATAGGCCGCGACCAGGGGTTTTTGATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTTCGCGTGATGATGTTAACTGGTGATCATGAATATAGTGCAAAGAGAGTTGCAACTGCTGTGGGCATCAATGAGTTTTATTGCAACCTGAAGCCTGAAGATAAGCTGAGCCATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTCGGGGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGGGATTGTGCTTGCTCACCGTGCTAGTGCAACTGCTATAGCTGTTGCAGATGTGCTGTTGCTTCGAGAAAATATTTCTGCAGTGCCATTTTGTATTGCCAAATCTCGCCAGACAACTTCACTGATTAAGCAAAACGTGGCTCTGGCATTGTCTAGCATATTTGTGGCTTCCCTTCCGTCAGTTTTGGGATTTCTGCCATTGTGGATAACGGTACTCTTACATGAAGGTGGAACCCTGCTTGTTTGTCTCAATTCCATACGCGCTTTAAATGAACCATCCTGGTCCTGGAAGCATGATATATTACAGTTGATTTGCAAGGCTAAATCTAGACTCCCCTCTCTTAGGACAAATTTAACAGGTTCAAGTAGCATTACAACTGCGAATTTGTGA 1914 0.4195 MAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVKELKENNPEFALVLDTKDDKLPNTFDLAYKRVPVHDIIVGSYVLVGAGESVPVDCEVFQGGATITIEHLTGEVKPLEAKVGDRVPGGARNLDGRIIVKVTKTWKESTLSKIVQLTEEAQLNKPKLQRWLDEFGENYSKVVVVLSIAIAVLGPLVFKWPFISTPACRGSIYRALGLMVAASPCALAVAPLAYATAISSCAKKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLIFKAIEPIYGHDIRNRESIISSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVENFEYFPGRGLTATVNSIESGTAGAKLLQASLGSIDFITSFCQSENESKKIKEAINASSYGSEFVHAALSINKKVTLIHLEDRPRPGVFDVIQELQDEAKFRVMMLTGDHEYSAKRVATAVGINEFYCNLKPEDKLSHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSSIFVASLPSVLGFLPLWITVLLHEGGTLLVCLNSIRALNEPSWSWKHDILQLICKAKSRLPSLRTNLTGSSSITTANL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02128 637 Gene3D - 35 161 - -
Tsu04g02128 637 CDD P-type_ATPase_HM 1 595 - -
Tsu04g02128 637 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 1 595 IPR027256 GO:0006812|GO:0016021|GO:0019829
Tsu04g02128 637 ProSitePatterns E1-E2 ATPases phosphorylation site. 265 271 IPR018303 -
Tsu04g02128 637 Gene3D - 256 544 IPR023214 -
Tsu04g02128 637 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 579 IPR023298 -
Tsu04g02128 637 Gene3D - 274 424 IPR023299 GO:0000166
Tsu04g02128 637 SFLD Haloacid Dehalogenase 245 546 - -
Tsu04g02128 637 SUPERFAMILY Calcium ATPase, transduction domain A 71 156 IPR008250 -
Tsu04g02128 637 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 1 622 - -
Tsu04g02128 637 Pfam haloacid dehalogenase-like hydrolase 261 506 - -
Tsu04g02128 637 PRINTS P-type cation-transporting ATPase superfamily signature 517 529 - -
Tsu04g02128 637 PRINTS P-type cation-transporting ATPase superfamily signature 416 427 - -
Tsu04g02128 637 PRINTS P-type cation-transporting ATPase superfamily signature 107 121 - -
Tsu04g02128 637 PRINTS P-type cation-transporting ATPase superfamily signature 493 512 - -
Tsu04g02128 637 PRINTS P-type cation-transporting ATPase superfamily signature 263 277 - -
Tsu04g02128 637 PRINTS P-type cation-transporting ATPase superfamily signature 439 449 - -
Tsu04g02128 637 SUPERFAMILY HAD-like 261 593 IPR036412 -
Tsu04g02128 637 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 23 284 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g02128 637 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 394 573 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g02128 637 Pfam E1-E2 ATPase 71 243 - -
Tsu04g02128 637 SFLD p-type atpase 245 546 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02128 Tsu-Chr4 23525972 23535037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02128 1 621 Primary Pumps ATPases AT4G37270 78.905 0.0 996
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02128 K01534 - gmx:100776309 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02128 04 23525972 23535037 Tsu04g02128 04 23525972 23535037 ECH