Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02127 atgaacaataaCCGAAAAGACATGGATCGAATCAAAGGTCCATGGAGCCCCGAAGAAGATGAAGCTTTACAGAAACTCGTTGAACGTCACGGTCCTCGTAACTGGTCACTCATCAGCCGTGCTATTCCCGGAAGGTCTGGAAAATCGTGTAGACTCCGTTGGTGTAATCAGCTTTCTCCACAAGTTGAGCATCGGGCTTTTACACCTGAAGAAGATAATTTAATTATCAGAGCCCATGCTCAGTTTGGTAATAAATGGGCCACAATAGCCCGATTACTTTCGGGCCGAACCGATAACGCTATTAAAAATCACTGGAATTCAACTCTGAAACGTAAGTGTTCTTCGTTTATGAGTTCTGATGATCCTGCTTTTGATCCTCAACCGCTTAAACGTTCCGCTAGCGTCGGTGCTCCGGGGAGTCCTTCCGGATCAGATTTAAGTGATTCTGGTGTGAACACTGTTTTTCGTCCTGTTCCGATTCGTCTACCTGTGGAGAAAATAGCTACAACTACATCGGAAGTAGTTGCGGCGGCGGAGGAGGAAGATGAGGATGACGGTGGTCCGTTAACTTCGCTTTCGCTTTCTCTTCCAGGTGTGGAGAGTAATTCTTCTTCAGATCAGAATCATCGATCTGCGGCGGTGGCGGCGATGAATGTGAATCCGATAACGGCTGTAACGGCTTCTGTTGCGGCGAAAGTTGGAGCGTTGAATTTAAGTGGAGAGTTTATGGCGGTTATGCAAGAGATGATAAAGAATGAAGTTAGGAGTTATATGGAAGAGCGTAATGGAATGTGTTTTCAAGGTGTTGATAGGCTTAGAAATGTTTCTGCTAAGCCAATTGGGATTAACAGGGTTGATTCTTAA 864 0.4502 MNNNRKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRAIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDNLIIRAHAQFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSFMSSDDPAFDPQPLKRSASVGAPGSPSGSDLSDSGVNTVFRPVPIRLPVEKIATTTSEVVAAAEEEDEDDGGPLTSLSLSLPGVESNSSSDQNHRSAAVAAMNVNPITAVTASVAAKVGALNLSGEFMAVMQEMIKNEVRSYMEERNGMCFQGVDRLRNVSAKPIGINRVDS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02127 287 MobiDBLite consensus disorder prediction 175 210 - -
Tsu04g02127 287 Gene3D - 65 131 - -
Tsu04g02127 287 MobiDBLite consensus disorder prediction 194 210 - -
Tsu04g02127 287 MobiDBLite consensus disorder prediction 116 150 - -
Tsu04g02127 287 PANTHER MYB TRANSCRIPTION FACTOR 3 260 - -
Tsu04g02127 287 CDD SANT 14 56 IPR001005 -
Tsu04g02127 287 Gene3D - 11 63 - -
Tsu04g02127 287 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Tsu04g02127 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Tsu04g02127 287 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Tsu04g02127 287 CDD SANT 66 109 IPR001005 -
Tsu04g02127 287 Pfam Myb-like DNA-binding domain 15 73 - -
Tsu04g02127 287 PANTHER MYB PROTEIN-RELATED 3 260 - -
Tsu04g02127 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Tsu04g02127 287 SMART sant 11 60 IPR001005 -
Tsu04g02127 287 SMART sant 63 111 IPR001005 -
Tsu04g02127 287 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02127 Tsu-Chr4 23522825 23524240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02127 2 258 MYB Transcription Factor Family AT4G37260 53.584 1.01e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g02127 Myb_DNA-bind_6 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02127 K09422 - gmx:100806145 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00580 05 4793938 4795619 Tsu04g02127 04 23522825 23524240 ECH
Tsu04g02127 04 23522825 23524240 Tsu04g02127 04 23522825 23524240 ECH
Tsu04g02127 04 23522825 23524240 Tsu05g00580 05 4793938 4795619 PCT