Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02122 ATGTCTCAAAccaaacatcaacaacaacaacaacaatctccTTCTTTTCTCGATGCTCTTCTTTGTGAAGAGCAAAACACATTCGAAGATGATGAATCCGATGCAAACGTTACTGATTCTGAAACATGTGTCGAAAACCCATCAACAAAGTTACAATCTTTACCTATTATTTTACTTGAAAATGATCTTTTTTGGGAACATGATGAACTTGTTTCgttaattttgaaagaaaaagagacccatttgttttcaattaataatgatgttgttattgttgatgGATCTTTGGAAGATTCTCGTGTTGAAGCTGTTAATTGGGTTTCTAAAGTTTGTTCTCATTATGGGTTTTCTACTTTGACTACTGTTCTTGCTGTTAACTACTTTGatagatttgttactagtttGTTGTTTCAAAAAGATAAACCTTGGATGACTCAGCTTACTGCTGTTGCTTGTTTGTCTCTTGCTGCTAAAATGGAAGAAACCCATGTGCCACTTCTTTTAGACCTTCAAgtTGAGGAATCTAGATTTGTGTTTGAAGCTAAAACTATACAAAGAATGGAGCTTTTGGTGTTATCTACTTTGAAATGGAGGATGCATCCAGTGACACCAATTTCTTTCTTTGAACACATTGTTAGAAGACTTGGTTTGAAGAGCCGTTTGCATTGGGAGTTTTTGTGGCGTTGTGAGAGGGTTCTTCTTCATGTCGTTGTTGATTCAAGGGTTATGATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACAATGATCCATGTAATTAAAGAGATTGAACCATTTAATGCGACTGAGTACATTGATCAACTTATGAGTTTACTAAAGATTAGTGAGGAACAAGTGAATGAGTGCTACAAACTTATGCTGAAGCTATTAGTTTGCAATGATGGCATTTACAGTCTTCATCAGAAACGTAAGCGTGTATCTGAACCAAGTAGTCCAGGCGGTGTGATTGATGCATCTTTCAGTTGTGATAGCTCAAATGATTCATGGACTGTGGCATCTTCAGTTTCACTTTCAGTTCAGCCGATGTTTAAGAGGAGCAGAGCTCAGGACCAGCAGATGCGATTGCCTTCTGTTAATCGTGTGTCTATTGATCTTCTTAATAGCCCTCGTTAA 1134 0.3404 MSQTKHQQQQQQSPSFLDALLCEEQNTFEDDESDANVTDSETCVENPSTKLQSLPIILLENDLFWEHDELVSLILKEKETHLFSINNDVVIVDGSLEDSRVEAVNWVSKVCSHYGFSTLTTVLAVNYFDRFVTSLLFQKDKPWMTQLTAVACLSLAAKMEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLHVVVDSRVMMSYLPSTLAAATMIHVIKEIEPFNATEYIDQLMSLLKISEEQVNECYKLMLKLLVCNDGIYSLHQKRKRVSEPSSPGGVIDASFSCDSSNDSWTVASSVSLSVQPMFKRSRAQDQQMRLPSVNRVSIDLLNSPR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02122 377 SUPERFAMILY Cyclin-like 65 200 IPR036915 -
Tsu04g02122 377 Pfam Cyclin, C-terminal domain 202 301 IPR004367 -
Tsu04g02122 377 Pfam Cyclin, N-terminal domain 96 199 IPR006671 -
Tsu04g02122 377 SUPERFAMILY Cyclin-like 203 305 IPR036915 -
Tsu04g02122 377 Gene3D - 97 200 - -
Tsu04g02122 377 PANTHER CYCLINS 6 361 IPR039361 -
Tsu04g02122 377 SMART Cyclin_C_2 202 331 IPR004367 -
Tsu04g02122 377 PANTHER CYCLIN-D3-2 6 361 - -
Tsu04g02122 377 Gene3D - 201 291 - -
Tsu04g02122 377 SMART cyclin_7 210 295 IPR013763 -
Tsu04g02122 377 SMART cyclin_7 105 193 IPR013763 -
Tsu04g02122 377 CDD CYCLIN 99 192 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02122 Tsu-Chr4 23449963 23452262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02122 5 367 Core Cell Cycle Gene Families AT5G67260 50.267 2.32e-108 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02122 K14505 - gmx:100785030 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00926 07 7580225 7582177 Tsu04g02122 04 23449963 23452262 ECH
Tsu04g02122 04 23449963 23452262 Tsu04g02122 04 23449963 23452262 ECH