Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02115 ATGGCCGTGGAACTCATGACAGgttacaacaacaacaacaacagaacAGAAACTTTCACAACCAAAGCAGAAGAAAATGCTGTCCAAGAAGCAGCATCTGGTTTAGAAAGCGTTGAAAAACTCATCAAATTACTCTCACAATCTCGCCATCAATACCAACCTTCAAATCCCAACAACAACCCTTCCATGGAAATTGAAAGAGATTGCAACGCTTTTGCAGACATAGCTGTTTCCAAATTCAAACGTGTTATCTCACTTCTTGAAAAAACCAGAACCGGTCATGCTCGTTTCAGAAAAGCACCTTTACCACAAATTCAACAGATTCAAATTTCTGAAACACCAATCTTCAACGCTACACCTTTACAACAAATTCCACCACAACCAACAACAAATCTTCACCGTTCAATAATTCAAAGAAAAGATTCATCAAAAACACTTAATTTTTCATACTCCTCTGCTGctaattcattcatttcatCACTCACCGGCGGCGGCGACACCGAAAGCAAACaacaaccatcatcatcatcacctgCTGGAGCTTTTCAAATAACAAATCTTTCTCATGTTTCATCTGTTGGTAAGCCAccactttcatcttcttcattgaaAAGAAAGTGTAGCTCTGAAACTTTGGGTTCTGGAAAGTGTGGTAGTTCATCTAGCCGTTGTCATTGTTCTAAAAAGAGTAGAAAAATGAGATTGAAGAGAGTTGTTAGGGTTCCTGCAATTAGTTTGAAGATGGCTGATATTCCACCAGATGATTATTCTTGGAGAAAATATGGACAAAAACCTATTAAAGGTTCACCTCATCCAAGGtactttaaatttaatttcatcataatttttttttccttccccATGTATGAAccttattcatatttttatttttatgtatgtacTTCTATTTGTGTACCAAGTtcaatttttgatttatttattttggtcaaatATCCTAGATAG 963 0.3084 MAVELMTGYNNNNNRTETFTTKAEENAVQEAASGLESVEKLIKLLSQSRHQYQPSNPNNNPSMEIERDCNAFADIAVSKFKRVISLLEKTRTGHARFRKAPLPQIQQIQISETPIFNATPLQQIPPQPTTNLHRSIIQRKDSSKTLNFSYSSAANSFISSLTGGGDTESKQQPSSSSPAGAFQITNLSHVSSVGKPPLSSSSLKRKCSSETLGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRYFKFNFIIIFFSFPMYEPYSYFYFYVCTSICVPSSIFDLFILVKYPR 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02115 320 PANTHER WRKY TRANSCRIPTION FACTOR 7 ISOFORM X1-RELATED 20 276 - -
Tsu04g02115 320 SUPERFAMILY WRKY DNA-binding domain 249 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g02115 320 Gene3D WRKY domain 230 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g02115 320 Pfam WRKY DNA -binding domain 254 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g02115 320 Pfam Plant zinc cluster domain 204 250 IPR018872 -
Tsu04g02115 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 276 IPR044810 GO:0003700
Tsu04g02115 320 SMART WRKY_cls 252 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g02115 320 MobiDBLite consensus disorder prediction 193 216 - -
Tsu04g02115 320 MobiDBLite consensus disorder prediction 162 181 - -
Tsu04g02115 320 ProSiteProfiles WRKY domain profile. 247 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02115 Tsu-Chr4 23381552 23384880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02115 1 275 WRKY Transcription Factor Family AT2G23320 47.241 6.41e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu04g02115 Plant_zn_clust 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02115 - - gmx:100170685 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02115 04 23381552 23384880 Tsu04g02115 04 23381552 23384880 ECH
Tsu04g02115 04 23381552 23384880 Tsu05g00589 05 4855568 4856483 PCT