Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02107 ATGTGGGATCTTAATGGTTCACCGTTTAAGAGAAAAGAACAAGAATCTGAAAGATGTTCTAAGACATCAATAGATGGAgatgatgaaaaaggaaaaagggTTGGTGGATCTATTTCAAATTCAAGTTCTTCAGCTGTAGTAATTGAAGAAGATTCAGAAGAAgatcaacaagaacaacaacctAAAAACAGAACCATGTTGATGAAGAAAAGAAACAGTAAAATATTTGGTTTTTCTGTTActcaagaagatgaagaagaagattctTTAGACAGTGATAATTTTCCTGTGACAAGAAATTTCTTTCCTATGGATCAAGAATCTGATAACATGGTTATAGAAAATGGTGGAAATGGAAATGAAAATGGAACATGTTCATCTTCTGCTACTAATTTTCCTCGTGCTCATTGGGTTGGTGTTAAATTTTGTCAATCAGAAACACTTGGTGGTGGAAAATCAGTTGaagtttcatcttcttcacaacCTATGAAGAAAAGTAGAAGAGGACCAAGGTCAAGAAGTTCACAATATAGAGGTGTTACTTTTTACAGAAGAACAGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATCTTGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCTGCTATTAAGTTTAGAGGAGTTGAAGCTGACATAAATTTTAACATAGAAGATTATGAAGAAGATTTGAAGCagATGAGTAATTTGACAAAGGAAGAGTTTGTACACGTACTTAGGAGACAAAGCACTGGATTTCCAAGAGGAAGCTCTAAATATAGAGGTGTTACATTGCATAAATGTGGAAGATGGGAAGCTAGAATGGGACAATTTTTAGGAAAAAAgTACGTTTATCTGGGTTTGTTTGATACTGAGGTTGAAGCTGCAAGgGCTTATGATAAAGCAGCAATAAAATGCAATGGAAAAGAGGCTGTCACAAATTTTGATCCTAGCATCTATGATAGTGAACTTAATTCTGCAGAACCAGCAAGTAATGGTGGTGATCACAATTTGGATTTAAGTTTGGGAAACTCaagttcaaaatcaattaataatGTTCAGCCATATGGGAATCACACTTCAAATGTTGCAAATCGTGCATCTGATCAATCTAATTGGCAGAATGGTGGAAACATAAACAAGCCTAAgCTTGTGAATATTCTACCAAAACCATATAATAGACCAAACAACATGGAAGCATATGGAAGAGATTTGCATGGAGAGAATGAAGCTTTAAGGATGCTAAGTCAAACTCATCttcattcttcatcttctaatgAAATGCATAGATATGGTCCCTTTAGAGATCACTCACAAATGCTTCATAGTTTCCCACATACTCACCCACCAAATTTTCATTTTCCCAGCAGCAGTTATGGAGGCCGAGTTGGAAGCGATCTTTCATTATCGACAAgcaatcaacaacaacaatggcaATCAGGGCCACATTATTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCACCTCAAATTAgaccatcttcttcttctcaagcTTGGCTGCACAAAAATGGTTTCCACACTCTCATGAGACCTTCTTGA 1593 0.3277 MWDLNGSPFKRKEQESERCSKTSIDGDDEKGKRVGGSISNSSSSAVVIEEDSEEDQQEQQPKNRTMLMKKRNSKIFGFSVTQEDEEEDSLDSDNFPVTRNFFPMDQESDNMVIENGGNGNENGTCSSSATNFPRAHWVGVKFCQSETLGGGKSVEVSSSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDSELNSAEPASNGGDHNLDLSLGNSSSKSINNVQPYGNHTSNVANRASDQSNWQNGGNINKPKLVNILPKPYNRPNNMEAYGRDLHGENEALRMLSQTHLHSSSSNEMHRYGPFRDHSQMLHSFPHTHPPNFHFPSSSYGGRVGSDLSLSTSNQQQQWQSGPHYLATAAAASSGFPPQIRPSSSSQAWLHKNGFHTLMRPS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02107 530 SUPERFAMILY DNA-binding domain 175 233 IPR016177 GO:0003677
Tsu04g02107 530 MobiDBLite consensus disorder prediction 150 177 - -
Tsu04g02107 530 MobiDBLite consensus disorder prediction 150 165 - -
Tsu04g02107 530 CDD AP2 176 233 IPR001471 GO:0003700|GO:0006355
Tsu04g02107 530 Gene3D AP2/ERF domain 267 326 IPR036955 GO:0003700|GO:0006355
Tsu04g02107 530 Gene3D AP2/ERF domain 175 234 IPR036955 GO:0003700|GO:0006355
Tsu04g02107 530 CDD AP2 267 327 IPR001471 GO:0003700|GO:0006355
Tsu04g02107 530 SMART rav1_2 268 331 IPR001471 GO:0003700|GO:0006355
Tsu04g02107 530 SMART rav1_2 176 238 IPR001471 GO:0003700|GO:0006355
Tsu04g02107 530 SUPERFAMILY DNA-binding domain 267 327 IPR016177 GO:0003677
Tsu04g02107 530 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 528 - -
Tsu04g02107 530 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 528 - -
Tsu04g02107 530 ProSiteProfiles AP2/ERF domain profile. 268 325 IPR001471 GO:0003700|GO:0006355
Tsu04g02107 530 MobiDBLite consensus disorder prediction 332 351 - -
Tsu04g02107 530 MobiDBLite consensus disorder prediction 1 68 - -
Tsu04g02107 530 PRINTS Ethylene responsive element binding protein signature 307 327 IPR001471 GO:0003700|GO:0006355
Tsu04g02107 530 PRINTS Ethylene responsive element binding protein signature 269 280 IPR001471 GO:0003700|GO:0006355
Tsu04g02107 530 Pfam AP2 domain 267 316 IPR001471 GO:0003700|GO:0006355
Tsu04g02107 530 Pfam AP2 domain 176 224 IPR001471 GO:0003700|GO:0006355
Tsu04g02107 530 ProSiteProfiles AP2/ERF domain profile. 176 232 IPR001471 GO:0003700|GO:0006355
Tsu04g02107 530 MobiDBLite consensus disorder prediction 379 400 - -
Tsu04g02107 530 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02107 Tsu-Chr4 23283222 23287202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02107 1 355 AP2-EREBP Transcription Factor Family AT4G36920 65.395 3.62e-127 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu04g02107 AP2 9.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02107 K09284 - gmx:100792442 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02107 04 23283222 23287202 Tsu04g02107 04 23283222 23287202 ECH
Tsu05g00595 05 4917524 4921080 Tsu04g02107 04 23283222 23287202 PCT