Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02086 ATGAGACTTATTGGTCAAACAAATAATCTATACTCAAGAAATACAGAATGTGTCGCGAACAATAATACAAGCTTAAATTTGAGTTTCTCCCCGAATACTCCAACTAGAATAGAGAATCATAGTGGAAGTAATTCTTCTACAATGGATCAAGATGTTTCTATCTATTTACCATTGAAAAGAACATCCACCCAAAGAGATCATGGTGAAAGTTCAAGCTCAAGTGTTCATGCAAGAATCCCTAGAGAGGAACATTTGTATGTACAAATGAATTCTCCCGCTTTCTCTAGCCCTTCCGATATTACTCAAAATATTGGTGAAATTTCCTTGCAACAACCAACAAATCACAATGcacaaaattttcaaagaagCAATATTAATCAAGGAAATACCATATTTTCCCCTCAAGCCAGAAGGGGAGCCTTCTACCTTAGGAGTCTTCTCAATTACCATGAACTAGGCACTTTTAATGTTGGTATCAATCAACTGAATGGTCTTGAATTGGTGCCTCAAATCAACATGAATCAACAAGAATATGCTTCATTGGCTAGAAGTTCTAGTTCAACTGCAATTGGTGGAAATGATGAGCAACAACTCCATATTATGTCAACATATGATCCTGAACTAATGAGAACAATGATGGAGATTGAGATACAAAGGAGACATATTCAAACTGAAAGAGGGCTTACAGAGGACGAAATAATGAAGTGTATTAGTTGTGGAAACTTTGAGACCACAGTCGAAGGAACATCGAAAAATAAAGATTTGTGTTGCATTTGTCAGGAGGAATATCTAACCGGTGAAGAAATCGGAAAGTTAGATTGTGCACATATTTTTCACATGAATTGCATCAAACTGTGGCTAGCAGAAAAGAACATATGTCCGCTTTGTAACCGTAGGGGATTGTTTGTTGTTGGTGATTGGTTCACAACTGAAAAGAGGTTTCTGTCTGAGGTAGCAAACCCAGTTAACCTGGTTTTTGTTATAGCAAATTTGGTGGCTGCTCAATTTGTGACAGAAATCGGTTGGAACGAGTTTGCAATTTCAATGTTTTCGTTAGGAATGTCTAGCTTGGAATTGGAAATCCATCTCAGGTGCTTTTCTCGTCTCATCAAAGATGTTGATCTTTCTctttgttcctttttatttctCAGGCTTGCAGGCCAGTACTGTTCAAGAAAACTATGA 1185 0.3629 MRLIGQTNNLYSRNTECVANNNTSLNLSFSPNTPTRIENHSGSNSSTMDQDVSIYLPLKRTSTQRDHGESSSSSVHARIPREEHLYVQMNSPAFSSPSDITQNIGEISLQQPTNHNAQNFQRSNINQGNTIFSPQARRGAFYLRSLLNYHELGTFNVGINQLNGLELVPQINMNQQEYASLARSSSSTAIGGNDEQQLHIMSTYDPELMRTMMEIEIQRRHIQTERGLTEDEIMKCISCGNFETTVEGTSKNKDLCCICQEEYLTGEEIGKLDCAHIFHMNCIKLWLAEKNICPLCNRRGLFVVGDWFTTEKRFLSEVANPVNLVFVIANLVAAQFVTEIGWNEFAISMFSLGMSSLELEIHLRCFSRLIKDVDLSLCSFLFLRLAGQYCSRKL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02086 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 227 303 - -
Tsu04g02086 394 SUPERFAMILY RING/U-box 255 302 - -
Tsu04g02086 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 227 303 IPR045191 GO:0061630
Tsu04g02086 394 Pfam Ring finger domain 255 297 IPR001841 -
Tsu04g02086 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 301 IPR013083 -
Tsu04g02086 394 ProSiteProfiles Zinc finger RING-type profile. 256 297 IPR001841 -
Tsu04g02086 394 SMART ring_2 256 296 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02086 Tsu-Chr4 23068817 23073498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02086 227 301 C3H Transcription Factor Family AT2G15530 41.772 3.14e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02086 - - lang:109350901 101.293