Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02079 ATGGAAGAAGATTGGGATCTCCATGCGGTTGTTAGAGGTTGTTCCACTGTCACCTCCACCACTTCAACCACCGCAATtacttcttctgtttcttcttcctctgtTTTTCCCCTGTACCCTGAACCTTCTTGTGGCTTTTCATCTATCTTTGGTGGTGAACAAAAAGCTCAAATTTTGTCACTTTCTACACACCCTTTTGAAACTAGAAGCTCTTCCATTGAAGAGTTGCATGAACTTTGTAAACCTTTCTTTTCTAGATCACAACCTATCTCTTTGGAAACTTCTCCTCTGTTTTCCTCCTTCTCTTATTCCTCTTCATCACCTAAATTAGCTCAAACACAagacaaacaacaacaacatcaacaacagcaacaacaacaacaaagaagTAAGCAACCACACCAAGGTGGTTCTGTCACCAACCCAAGATCAAAAAGaaggAAAAACCAACTTAAGAAAGTTTGTCAAGTACCTGTTGAGAGTCTCTCTTCAGACATATGGGCATGGAGGAAATATGGACAAAAACCCATAAAAGGGTCACCATATCCAAgGGGATATTATAGATGTAGCAGTTCAAAAGGGTGTttagcaagaaaacaagttgaAAGAAACAGATCAGATCCAACAATGTTTATAGTAACATATACATCTGAACACAACCATCCTGCTCCTACTCATAAAAACTCTCTTGCTGGTTCAACACGCCAGAAGCCATTAACACCTCCTCAATCTGAAACCAACAAAGATCAATCTGAGAAAGATCTTACAAAACCCTCTTCTCCTGCTACATCAGAAGAGGTTCAAACTCAAGGAGAAAAGTCAGAgagcaaagaagaaaaagaagaagattgttTTATGGATGATGAAGAAGGAGATGAATTTGGAAGTTTAGATGATGTTGTTTTAACAGATGATTTCTTTGAGAGTTTAGATGAACTGAATCAACTTGGTGGTTCTGGAGATTGTTTCACAGATCCATTTTCTTCAGCCATTGCAATTCCTAATTGGGTGGCCAATAGTGCTGCTGCTGCTACAGCTGCAGGTGGTAGCTGA 1053 0.3523 MEEDWDLHAVVRGCSTVTSTTSTTAITSSVSSSSVFPLYPEPSCGFSSIFGGEQKAQILSLSTHPFETRSSSIEELHELCKPFFSRSQPISLETSPLFSSFSYSSSSPKLAQTQDKQQQHQQQQQQQQRSKQPHQGGSVTNPRSKRRKNQLKKVCQVPVESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTSEHNHPAPTHKNSLAGSTRQKPLTPPQSETNKDQSEKDLTKPSSPATSEEVQTQGEKSESKEEKEEDCFMDDEEGDEFGSLDDVVLTDDFFESLDELNQLGGSGDCFTDPFSSAIAIPNWVANSAAAATAAGGS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02079 350 ProSiteProfiles WRKY domain profile. 158 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g02079 350 SUPERFAMILY WRKY DNA-binding domain 162 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g02079 350 MobiDBLite consensus disorder prediction 103 144 - -
Tsu04g02079 350 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 349 - -
Tsu04g02079 350 MobiDBLite consensus disorder prediction 103 155 - -
Tsu04g02079 350 Coils Coil 110 130 - -
Tsu04g02079 350 Gene3D WRKY domain 147 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g02079 350 Pfam WRKY DNA -binding domain 165 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g02079 350 MobiDBLite consensus disorder prediction 217 246 - -
Tsu04g02079 350 MobiDBLite consensus disorder prediction 217 294 - -
Tsu04g02079 350 SMART WRKY_cls 163 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g02079 350 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 349 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02079 Tsu-Chr4 22908995 22910709 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02079 1 347 WRKY Transcription Factor Family AT4G01250 43.785 9.93e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu04g02079 WRKY 2.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02079 K13425 - gmx:100798084 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02079 04 22908995 22910709 Tsu01g04366 01 51539058 51540246 ECH
Tsu04g02079 04 22908995 22910709 Tsu04g02079 04 22908995 22910709 ECH
Tsu08g01015 08 11149739 11151202 Tsu04g02079 04 22908995 22910709 ECH
Tsu02g00418 02 3518224 3519725 Tsu04g02079 04 22908995 22910709 ECH
Tsu04g02079 04 22908995 22910709 Tsu08g01015 08 11149739 11151202 PCT