Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02066 ATGGAGCTTCATTACTATATTCTTCAACTCACAGTTTTGTTTCTAACTTTGTTTCCTCAATCACTCAACTGCCAACAAGTATACCTTAATAACACTGTCTTTGACTGCACTAATACCCCTTCTGTACCAAAAGGATACCTCTGCAATGGCCATAAAAAATCATGCACTTCCTTTTTAGTTTTCAAGTCAAAACATCCCTATGATAACCCTACAAAAATTGCCTATCTTCTTGGCTCTGAAGCATCAACCATAGCTTCAATCAATAAGATATCAATAAATGAGAAAATTCCTTCCAATAAATCAGTCATTGTCCCGGTCTTGTGTTCATGTGCTGGAAATATATACCAGCATAGCACATCTTACTCTGTAATGCAGAATGATACATACTTTGAGTTGGTAAAAGAAACTTACCAAGGCCTTACTACCTGTCAGGCAATGATGGGTCAGAATTACTATGCTCCTATCTACATTCCAGTTGGTGCTGAGCTCACAGTTCCAGTATTATGTGCTTGTCCCACAGCAAACCTGACGGCAAGAGGGGTTACCTCCTTGCTAGTTCACATAGTGAACTATGGTGATACGGTTAAGTCCATAGGAGAAGCTTATGGTGTCGGTGAAAATAGCATGCGAGAGGCTAATGAGTTGCCTCTGCTAAAAAGTGCAAACAGCAGTGTGATCCTCTATGCATCGACGCCTATACTAGTTCCTCTGAGAGGCAAGAGTTGCAAAGAGAACCCAGAAAGATTCTATTGCAAATGTTCCGAGGCACTACATGCTGATGGAAGTTCCGAGGGTCTATTCTGTGATGAATCTCATGGTCAAAAAATCCCGGCAAAATTGGTTGTTGCCTCAGatgaaaagagagaaaaaatccGCAAGGAAAAGCTGTTCAGGCAAAACGGTGGCTACTTGTTGCAAGAGACATTCTCATCCTTTGGAAATGGAGAAATGGCAAAGCTTTTTACAGCAGAGGAGCTGCAAAGAGCGACAGATAACTACAACCGGAGCAGGTTTCTTGGTCAGGGTGGCTATGGCATGGTGTATAAAGGAATGTTACCAGATGGAACCATAGTTGCAGTTAAAAAGTCAAAAGAACTTGAAAGGAACCAGATAGCGACTTTTGTCAATGAAGTGGTCATCTTATCACAGATCAACCACAGGAACATTGTCAAACTCTTAGGCTGTTGTCTTGAGACAGAAACCCCATTACTAGTTTACGAATATATCCCCAATGGAACTCTTTCCCAACATATACATAGGAAAGACCACGAGTCGTCCCTTTCATGGGAAAATCGCCTTAGAATTGCATGTGAAGTTGCCGGAGCAGTGGCATATATGCATTTTTCAGCTTCTATTCCAATCTTTCACAGAGACATCAAACCCACCAACATACTCCTAGACAGTAACTATAGTGCCAAAGTGTCTGATTTTGGTACATCAAGATCAATACCACTAGATAAGACTCACCTAACCACATTTGTAGGTGGAACTTTTGGGTACATAGACCCTGAATATTTCCAGTCCAGTCAATTTACAGATAAGAGTGATGTATACAGTTTTGGGGTTGTGCTTGTAGAGCTCATAACTGGTAGAAAGCCAATTTCATTCTATGATGAAGATGAGGGTCAGAATTTGATTGGACATTTCATTTCTGCGATGAAAGAGAACCAACTTTCTCAAATTATAGATGCTAGAGTGCAAAAGGAATCAGGGAAAGATGTCATTCTTACCATTTCAAATCTTACAATGAGATGCTTGAGACTCAATGGTAAGAAAAGACCAACAATGAGAGAGGTTTCAGCAGAATTAGAAACACTGAGAAAGGCACAAAGCACCTTTCAAATcaacaatgatgatgatgagtcaCCAACAAGTGATGAACAATCATTAGGGCACACAATTAATGAAACTGACCAAGAATCCAGAGAAGAAAGCATTCCGCTTTACTTACAAATAGAATCTACATCATTCTAA 1974 0.3936 MELHYYILQLTVLFLTLFPQSLNCQQVYLNNTVFDCTNTPSVPKGYLCNGHKKSCTSFLVFKSKHPYDNPTKIAYLLGSEASTIASINKISINEKIPSNKSVIVPVLCSCAGNIYQHSTSYSVMQNDTYFELVKETYQGLTTCQAMMGQNYYAPIYIPVGAELTVPVLCACPTANLTARGVTSLLVHIVNYGDTVKSIGEAYGVGENSMREANELPLLKSANSSVILYASTPILVPLRGKSCKENPERFYCKCSEALHADGSSEGLFCDESHGQKIPAKLVVASDEKREKIRKEKLFRQNGGYLLQETFSSFGNGEMAKLFTAEELQRATDNYNRSRFLGQGGYGMVYKGMLPDGTIVAVKKSKELERNQIATFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEYIPNGTLSQHIHRKDHESSLSWENRLRIACEVAGAVAYMHFSASIPIFHRDIKPTNILLDSNYSAKVSDFGTSRSIPLDKTHLTTFVGGTFGYIDPEYFQSSQFTDKSDVYSFGVVLVELITGRKPISFYDEDEGQNLIGHFISAMKENQLSQIIDARVQKESGKDVILTISNLTMRCLRLNGKKRPTMREVSAELETLRKAQSTFQINNDDDESPTSDEQSLGHTINETDQESREESIPLYLQIESTSF 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02066 657 ProSitePatterns Protein kinases ATP-binding region signature. 339 362 IPR017441 GO:0005524
Tsu04g02066 657 CDD STKc_IRAK 339 606 - -
Tsu04g02066 657 Gene3D Phosphorylase Kinase; domain 1 308 408 - -
Tsu04g02066 657 SMART serkin_6 333 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02066 657 MobiDBLite consensus disorder prediction 613 646 - -
Tsu04g02066 657 Pfam Protein kinase domain 333 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02066 657 Gene3D Transferase(Phosphotransferase) domain 1 409 631 - -
Tsu04g02066 657 Pfam LysM domain 187 215 IPR018392 -
Tsu04g02066 657 ProSiteProfiles Protein kinase domain profile. 333 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02066 657 SUPERFAMILY Protein kinase-like (PK-like) 315 603 IPR011009 -
Tsu04g02066 657 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 637 IPR045274 GO:0007166
Tsu04g02066 657 PANTHER LYSM TYPE RECEPTOR KINASE 25 637 - -
Tsu04g02066 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02066 Tsu-Chr4 22717497 22720359 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02066 286 610 Receptor kinase-like Gene Family AT1G16130 58.282 7.78e-136 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tsu04g02066 Pkinase 5.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02066 - - gmx:100795455 975.311