LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g02061	ATGATGAAAGAAAAACATGGGGCAATTAATACCTTGAATCTCAAACTACACCTCAAATTTGAAGTTCAACTCATCAAACTCATGGAGTTTTTTTACCTTTACATTCTCTCCACAACAATCCTTCTATTTCCTCAGTCAATCAATTGCCAACAGTTATACCTTAAAAACACTACCACTGATTGCTCGGACAACCCTTTTGCACCAAAAGGATATCTATGCAATAGCCCTCAAAACTCATGCAATTCATTCTTAATTTTCAGATCAAAGCCACCTTATGACAACCCTACAAGTATTGCATACCTTCTTGGTTCTGAAGCATCCAACATAGCCTCAATCAACAACATCTCAAGAGATACCAAGATTCCTTCCAATAAAACAATTATTGTACCTATCTTGTGTTCATGTTCTGGAAATATCTACCAACATAACACTCCTTACACTGTCAAAAAAGACGATACTTACTATCACTTGGTAAATGAAACTTACCAAAACCTCACAACATGTCAGGCTTTGAAGGGTCAAAATTACTATGCTTCTGAAAACATTACAATTGGTGCTGAGCTAACAGTTCCAGTACTCTGTGCTTGTCCTACAACAGAACAGACGGCGAAAGGGATCACATCCTTACTGGTTTACACAGTGAACTATGGTGAGACTGTCAAGTCTATAGGAGAGGCTTATGGTGTTGATGAAGAAAGCATACTAGAGGCAAATGAGTTGCAAGTGGCACAAAATGAAAACAGCAGTGTGATTCTCTATGCATTGACACCTATATTGGTTCCTCTTGGAGGAAAGAGTTGCAAAGAGGATCCTGATAGTTTCTATTGCACATGTTCTAAGGGAAGGGTTGCAGATGGAAGCTGTGATGAATCTGATGATCAAAAGTTTCCTGCAAAATTGGTTGCTGCATTAGGGGTTGGCCTTGGTGCAGGCTttctgattttgtttcttttgggTTACAAGttacatcaatatataaagAAAAGGAGAGGAGGTATTCGTAAGGAAAAGCTATTCAGACAAAACGGAGGCTACTTGTTACAAGAGAAGTTATCATCTTATGGAAATGGCGAAATGGCAAAACTTTTTACAGCAGAGGATATGCAAAGATCAACAGATAATTATAACCAGAGTAGGTTTCTTGGTCAGGGTGGTTATGGCACGGTGTACAAAGGAATGTTACAGGATGGAACCATAGTTGCAGTTAAAAAGTCAAAACAGCTCGACAGAAACCAAATAGAAACTTTTGTCAATGAAGTGGTCATCTTATCACAGATCAATCATAGGAACATTGTCAAACTATTAGGTTGTTGTCTTGAGACAGAAACTCCATTACTTGTCTATGAATATATCCCCAATGAAACACTTTCTCAACACATCCATAGGAAAGATCATGACTCAACCCTTTCATGGGAAAGTCGCCTTAGAATTGCATGTGAGGTAGCCGGAGCAGTTGCATATATGCATTTTTCAGCTTCAATTCCAATCTTTCACAGAGATATAAAGCCAAGTAACATACTCCTAGACAATAACTTTAGTGCCAGAGTGTCTGATTTTGGAACATCTAGATCAGTTCCAGTAGATAAGACTCATTTAACCACAGCTGTAGGAGGTACTTTTGGGTACATGGATCCTGAATATTTTCAGTCAAGTCAATTTACAGATAAGAGCGATGTATATAGTTTTGGTGTTGTGCTTGTAGAGCTTATAACCGGGAGAAAGCCAATAACATtcaatgatgaagatgaaggtCAGAATATGACTGCAAATTTCATTTCGGTGATGAAGGACAACCAACTTTCTACAATTTTAGATGACACAGTGATTAAGGAAGCAAGGAAAGAGGACATTATTGCCATTGCAAATCTTGCAGTGAGATGTTTGAGACTCAATGGTAAGAAAAGGCCAACAATGAAGGAGGTTTCAGCAGAATTGGAAGCATTGAGAAAGGTACAAAGTTCCTTACATATCAAAGATGATCAAGAGTCACCAAGTGATGAACAATCATTTGAGCATTCAAATAATGGCATATTTCATGAGTCCACAGTGGAAAGCTTTTCGCTGTCCTCGCAAATGGAATCCACATCCTTCTAA	2094	0.3744	MMKEKHGAINTLNLKLHLKFEVQLIKLMEFFYLYILSTTILLFPQSINCQQLYLKNTTTDCSDNPFAPKGYLCNSPQNSCNSFLIFRSKPPYDNPTSIAYLLGSEASNIASINNISRDTKIPSNKTIIVPILCSCSGNIYQHNTPYTVKKDDTYYHLVNETYQNLTTCQALKGQNYYASENITIGAELTVPVLCACPTTEQTAKGITSLLVYTVNYGETVKSIGEAYGVDEESILEANELQVAQNENSSVILYALTPILVPLGGKSCKEDPDSFYCTCSKGRVADGSCDESDDQKFPAKLVAALGVGLGAGFLILFLLGYKLHQYIKKRRGGIRKEKLFRQNGGYLLQEKLSSYGNGEMAKLFTAEDMQRSTDNYNQSRFLGQGGYGTVYKGMLQDGTIVAVKKSKQLDRNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEYIPNETLSQHIHRKDHDSTLSWESRLRIACEVAGAVAYMHFSASIPIFHRDIKPSNILLDNNFSARVSDFGTSRSVPVDKTHLTTAVGGTFGYMDPEYFQSSQFTDKSDVYSFGVVLVELITGRKPITFNDEDEGQNMTANFISVMKDNQLSTILDDTVIKEARKEDIIAIANLAVRCLRLNGKKRPTMKEVSAELEALRKVQSSLHIKDDQESPSDEQSFEHSNNGIFHESTVESFSLSSQMESTSF	697

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g02061	697	SMART	serkin_6	375	648	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g02061	697	SMART	LysM_2	211	261	IPR018392	-
	Tsu04g02061	697	SMART	LysM_2	145	191	IPR018392	-
	Tsu04g02061	697	SMART	LysM_2	91	130	IPR018392	-
	Tsu04g02061	697	MobiDBLite	consensus disorder prediction	656	676	-	-
	Tsu04g02061	697	Pfam	LysM domain	212	241	IPR018392	-
	Tsu04g02061	697	Pfam	Protein kinase domain	375	642	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g02061	697	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	49	681	IPR045274	GO:0007166
	Tsu04g02061	697	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	496	508	IPR008271	GO:0004672\|GO:0006468
	Tsu04g02061	697	ProSiteProfiles	LysM domain profile.	210	260	IPR018392	-
	Tsu04g02061	697	ProSiteProfiles	Protein kinase domain profile.	375	648	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g02061	697	PANTHER	LYSM TYPE RECEPTOR KINASE	49	681	-	-
	Tsu04g02061	697	CDD	STKc_IRAK	381	648	-	-
	Tsu04g02061	697	Gene3D	Transferase(Phosphotransferase) domain 1	451	673	-	-
	Tsu04g02061	697	Gene3D	Phosphorylase Kinase; domain 1	348	450	-	-
	Tsu04g02061	697	SUPERFAMILY	Protein kinase-like (PK-like)	359	645	IPR011009	-
	Tsu04g02061	697	ProSitePatterns	Protein kinases ATP-binding region signature.	381	404	IPR017441	GO:0005524
	Tsu04g02061	697	Gene3D	LysM domain	197	270	IPR036779	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g02061	Tsu-Chr4	22622670	22625635	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g02061	263	674	Receptor kinase-like Gene Family	AT1G16120	51.574	2.42e-140	426

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Tsu04g02061		Pkinase	1.5e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g02061	-		-	mtr:MTR_7g079350	1151.73