Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02041 ATGGTTTCTCTCTCAACCAACCCTTTCTTTCCCCTCACTGCACATAAAACCTCACCTTCTACTAGATTTCAACCCAAAAACAACAACGCAAATCCATTCTATAACAACAAACACAGTAAAGATCACAGAAAAGTTGTTTGTGCTTGCATCGCTCCTCCACGTAACTTCAACACCCAAGACTCTTCCGCCATTAAATTCAAtGGTTCTTCCAAATCAGAACAATTAAGCACAGTGAGGGATcatgaggatgattctgatGTTCTTATTGAGTGTAGAGATGTTTACAAGTCTtttggggaaaagaaaatcttaAATGGTGTCAGCTTCAAGATCAGGCATGGTGAAGCTGTTGGAATAATTGGTCCCTCCGGGACTGGCAAATCTACAATTTTGAAGATTATTGCAGGACTTCTTGCTCCAGACAAGGGAGAAGTTTATATTCGAGGTAGAAAACGAGGTGGTTTGATAAGCGACGACGAGATATCTGGTCTTCGGATTGGATTAGTGTTCCAAAGTGCAGCACTTTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGCCTGAGGAACAGATATCAGAGCTTGTCAAGGAAACCTTGGCTGCAGTTGGTTTGAAGGGAGTTGAGGAGCGACTTCCTTCTGAGTTATCAGGCGGAATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATTTGTGACACCACAAAGGATTCAATAGAACCAGAGGTGCTCTTGTATGACGAACCAACTGCTGGACTTGATCCCATTGCATCTACTGTTGTTGAGGATCTGATTCGCTCTGTGCACATAAAAGGACGAGATGCACTTGGAAAACCTGGGAATATTACATCTTACGTGGTTGTTACTCACCAACATAGTACTATTAAAAGAGCTATTGATAGGTTGTTGTTTTTACACAAGGGAAAGCTTGTTTGGGAAGGAATGACTCATGAATTTACCACTTCAACGAATCCAATTGTCCAGCAGTTTGCATCCGGGAGCCTAGATGGTCCTATCAAATATTAG 1050 0.401 MVSLSTNPFFPLTAHKTSPSTRFQPKNNNANPFYNNKHSKDHRKVVCACIAPPRNFNTQDSSAIKFNGSSKSEQLSTVRDHEDDSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRGGLISDDEISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMPEEQISELVKETLAAVGLKGVEERLPSELSGGMKKRVALARSIICDTTKDSIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDALGKPGNITSYVVVTHQHSTIKRAIDRLLFLHKGKLVWEGMTHEFTTSTNPIVQQFASGSLDGPIKY 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02041 349 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 89 340 IPR003439 GO:0005524
Tsu04g02041 349 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 10 349 - -
Tsu04g02041 349 Pfam ABC transporter 104 259 IPR003439 GO:0005524
Tsu04g02041 349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 330 IPR027417 -
Tsu04g02041 349 CDD ABC_Org_Solvent_Resistant 89 338 - -
Tsu04g02041 349 SMART AAA_5 113 317 IPR003593 -
Tsu04g02041 349 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 10 349 - -
Tsu04g02041 349 ProSitePatterns ABC transporters family signature. 224 238 IPR017871 GO:0005524
Tsu04g02041 349 Gene3D - 75 341 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02041 Tsu-Chr4 22399627 22405279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02041 88 318 Calmodulin-binding Proteins AT2G36910 28.916 1.26e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02041 - - gmx:100789283 590.497