Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02033 ATGAAAGGCGAATTCCCAGAAAGGTTAGGGCAGCCAGAATGTCAGTACTATCTGAAAACGGGAACTTGCAAATTTGGAGCCACATGTAGGTTTCATCATCCTAAAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAACATTTTAGGCTATCCACTCCGCCCAAATGAGTCTGAATGTGCTTATTATTTAAGAACCGGTCAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAATAATATGGTACTTTCAATGAGGGGTTCCCCTGCTTATCCTACTGTCCAGTCTCCAACTACACCAGGACAGCAGTCATATGCGGCAGGAATTGCAAATTGGTCTAGTTCATCCTATATTCCCAGTCCGAGGTGGCAAGGCCCTTCAAGTTATGCACCCTTAATTCTACCTCAAGGAATGGTTTCAGTGCCTGGGTGGAGTACATACAATGGTCAAATGGGATCAGACAGTCCACAGCAAACAATGAGAAATGATCAAACTTATGGAACATCTCTCCAAGGTGAACCAGAAAATGCAGCACTCCAAGGGGCATATTCTCAATACCGTTCTGGATCTGTTCCAGTAGGATTCTATGCTTTGCAAAGGGACAACATTTTTCCAGAGAGACCTGATCAGCCTGAATGCCAATTCTACATGAAGACCGGAGATTGCAAGTTCGGTGCAGTCTGTCGTTTTCACCATCCACGTGAGAGGACGGTTCCTGCCCCTGATTGTGTTTTGAGTCCCATTGGCCTTCCTTTGCGTCCTGGAGAACCTCTTTGTGTCTTCTATTCGCGGTATGGCATATGCAAATTTGGCCCAAGCTGCAAGTTTGATCACCCAATGGGAATTTTCACCTATAATGTACCCGCATCGCCATTAGCTGATGCCTCAGGACGTCGTCTGTTAGGTTCTTCATCAGGAACTGCTGCATTAAGTTTATCATCAGAAGGACTTGTTGAGTCGAGTTCAGCAAAGCCAAGGAGGCTTTCACTATCAGAGACTAGACCGATTCCGTCTGGTGATGATAACATTGATGATGAGGGATAA 1056 0.4527 MKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGIAGRVALNILGYPLRPNESECAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRGSPAYPTVQSPTTPGQQSYAAGIANWSSSSYIPSPRWQGPSSYAPLILPQGMVSVPGWSTYNGQMGSDSPQQTMRNDQTYGTSLQGEPENAALQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTVPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVPASPLADASGRRLLGSSSGTAALSLSSEGLVESSSAKPRRLSLSETRPIPSGDDNIDDEG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02033 351 MobiDBLite consensus disorder prediction 316 351 - -
Tsu04g02033 351 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 1 350 - -
Tsu04g02033 351 Gene3D - 7 92 - -
Tsu04g02033 351 ProSiteProfiles Zinc finger C3H1-type profile. 211 239 IPR000571 GO:0046872
Tsu04g02033 351 SUPERFAMILY CCCH zinc finger 12 37 IPR036855 GO:0046872
Tsu04g02033 351 SUPERFAMILY CCCH zinc finger 214 239 IPR036855 GO:0046872
Tsu04g02033 351 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
Tsu04g02033 351 SUPERFAMILY CCCH zinc finger 260 284 IPR036855 GO:0046872
Tsu04g02033 351 PANTHER PROTEIN PHOSPHATASE RELATED 1 350 - -
Tsu04g02033 351 SUPERFAMILY CCCH zinc finger 55 82 IPR036855 GO:0046872
Tsu04g02033 351 SMART c3hfinal6 211 238 IPR000571 GO:0046872
Tsu04g02033 351 SMART c3hfinal6 8 35 IPR000571 GO:0046872
Tsu04g02033 351 SMART c3hfinal6 257 284 IPR000571 GO:0046872
Tsu04g02033 351 SMART c3hfinal6 54 81 IPR000571 GO:0046872
Tsu04g02033 351 ProSiteProfiles Zinc finger C3H1-type profile. 257 285 IPR000571 GO:0046872
Tsu04g02033 351 ProSiteProfiles Zinc finger C3H1-type profile. 8 36 IPR000571 GO:0046872
Tsu04g02033 351 Gene3D - 208 286 - -
Tsu04g02033 351 MobiDBLite consensus disorder prediction 316 332 - -
Tsu04g02033 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 284 IPR000571 GO:0046872
Tsu04g02033 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 213 238 IPR000571 GO:0046872
Tsu04g02033 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 57 81 IPR000571 GO:0046872
Tsu04g02033 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 10 35 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02033 Tsu-Chr4 22257424 22265498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02033 1 349 C2H2 Transcription Factor Family AT3G02830 59.551 5.26e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu04g02033 zf-CCCH 4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02033 - - gmx:100786261 655.595