Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02031 ATGGCTTGTGTTCTTGAAACAAATAACAATCGGGTATCATGGGAGTCACCAAAACTTCAAGATACGTTTTTAAGAGTTGTGACTCAACTTGGAATTGATAAGGCAACACCAAAACAAATTACTAAATTGATGGATGTTCCGGGTTTGAAAAAAGAGCATGTTGCTAGCCATTTGCAGAAATCCAGACTTCGTTTGAAGAGTTCAAGTAAAAAGACAAAGTCAAAAAGTGGAACGGAAAATTCAAAGCATGATCAATATCACATTCCTAATAAAGCCTTGAAGTTGTTGAGTCAATGCCAAAACAGGATCAATATCATGTTCCTAACTCAGGAATGGAGCAACAAGTCTCTAGAAACATAA 360 0.3611 MACVLETNNNRVSWESPKLQDTFLRVVTQLGIDKATPKQITKLMDVPGLKKEHVASHLQKSRLRLKSSSKKTKSKSGTENSKHDQYHIPNKALKLLSQCQNRINIMFLTQEWSNKSLET 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02031 119 MobiDBLite consensus disorder prediction 55 87 - -
Tsu04g02031 119 Gene3D - 6 67 - -
Tsu04g02031 119 MobiDBLite consensus disorder prediction 72 87 - -
Tsu04g02031 119 SUPERFAMILY Homeodomain-like 9 67 IPR009057 -
Tsu04g02031 119 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 9 64 IPR006447 GO:0003677
Tsu04g02031 119 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 16 97 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02031 Tsu-Chr4 22205361 22205720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02031 11 82 Response Regulator Gene Family AT2G01760 51.389 3.20e-16 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu04g02031 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02031 - K14491 mtr:MTR_6g045327 67.781