Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02025 ATGGGTGTGATAGTGGAAGTTGAAAACGTTGATGAAGACGACGCCGTTTTGATTCCTCCATCCAATTTCTCAATGGTTGAAGATTGCATTTACCGATCTAGTCTTCCTCAACCTTCCAATTTTCCTTTCCTTCAAACCCTTAACCTTCGTTCAATCATATACTTGTGTCCTGAACCCTATCCGGAAGAGAATTTGGAGTTCCTAAAGTCACAGAATATTCGCTTATTTCAATTTGGAATTGAGGGGAAAACGGAAGTTTCCTTACCTGTTCTCAAGGATTCTATTATGGAGGCTTTGAAAGTTTTGATTGATGTGAGAAATCACCCTATTTTGATTCATTGCAAACGAGGAAAGCATAGAACAGGTTCCCTTGTTGGATGCTTCAGAAAGTTGCAGAATTGGTGTTTGTCTTCCGTGTTTGAGGAGTATCAGCGATTTGCAGGTGTTAAGTCCAGGACAACGGATTTAACATTTATAGAGATGTTTGACGTTTTAAGTCTTAGGCAGTGCCTCTACAGCATCATCTACCAGTACCAAGGTGCTTCAAAGAAGCGCAGATTGATGTACCAAGATGAGAATTTACAGAAACCTCGGCTGACATCATTTTAA 609 0.4007 MGVIVEVENVDEDDAVLIPPSNFSMVEDCIYRSSLPQPSNFPFLQTLNLRSIIYLCPEPYPEENLEFLKSQNIRLFQFGIEGKTEVSLPVLKDSIMEALKVLIDVRNHPILIHCKRGKHRTGSLVGCFRKLQNWCLSSVFEEYQRFAGVKSRTTDLTFIEMFDVLSLRQCLYSIIYQYQGASKKRRLMYQDENLQKPRLTSF 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02025 202 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Tsu04g02025 202 PRINTS Plant and fungal dual specificity phosphatase signature 54 67 IPR020428 GO:0016791
Tsu04g02025 202 PRINTS Plant and fungal dual specificity phosphatase signature 73 87 IPR020428 GO:0016791
Tsu04g02025 202 PRINTS Plant and fungal dual specificity phosphatase signature 90 104 IPR020428 GO:0016791
Tsu04g02025 202 ProSiteProfiles Dual specificity protein phosphatase domain profile. 22 171 IPR020422 GO:0006470|GO:0008138
Tsu04g02025 202 CDD PFA-DSP_Siw14 17 163 - -
Tsu04g02025 202 Gene3D Protein tyrosine phosphatase superfamily 16 166 IPR029021 -
Tsu04g02025 202 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 12 185 - -
Tsu04g02025 202 Pfam Tyrosine phosphatase family 17 164 IPR004861 -
Tsu04g02025 202 PANTHER TYROSINE-PROTEIN PHOSPHATASE 12 185 - -
Tsu04g02025 202 ProSitePatterns Tyrosine specific protein phosphatases active site. 112 122 IPR016130 GO:0016311|GO:0016791
Tsu04g02025 202 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 164 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02025 Tsu-Chr4 22135000 22137149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02025 1 198 Protein tyrosine phosphatase (PTP) family AT3G02800 67.337 1.13e-99 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02025 K18045 - gmx:100787713 356.295