LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g02023	ATGGAACAACACAACAATAACATCAACAAAAGTAATaacaacaatgaaaacaaaaatggttTTGATGAAATCTATGTATCTGATTCAAAAGGAGGAGACTTTTTTGATTTTTCACCCAAAAAAAGCATAGCTGAAAGAAGGGGTTTCAATAAAAATACAGCAAGGATTAACACAACACGTTTTCGTATCGATGGTTTTGGTGGAACAAACTCTTCGGCTTCTCCTACAGCTCGATCACCATGTCTCACAATACCACCTGGAATTAGTCCAACTGCATTGCTTGATTCCCCAATCATGCTTCCTAATTCTCAGgCCATGCCGTCTCCCACCACCGGAAGTTTCGCCATGCTTCCACCTCTAATTGATGACGGATCAATGCTACCTTCTATCACACATGAACAAAGGGAAGTTGATGCTTCTTTCAAATTCATGCCTGAAATCAATTTGGGTCCTAATTCTTTGTCTCCCTATCTTGCTTCTTTAAACGAGGTTTCTAGTAAATGCCACATGATGAATGAAGCACATGAAGACTTGGAAATGCTTGCTCAAGGTCAACAAATGTTAGATTTTTCAGTGCCAAATGATTTTGCAAACAACTATTTAGATAGAAATAGGGGAGTACATTTCGACAATGATGCGAAATTGGTAGATGATATGTTCATTGATGTCAGTAATGTTGATGTGCCAATTTCTCGTTCAGAAGAAAGTAGCGATATAAGCACCTTGCCAGAAGATTTGATCCATGATGAGGATATTCGACAACTTCTTTTAGAAGAAGAACAGAAAGAAATGTCTCATGCAACAAGCGGAAAAACCTCAGAGGATGGTTATAATTGGAGAAAATATGGACAAAAACAGGTTAAAGGTAGTGATTATCCAAGAAGCTACTATAAATGTACAAAGTCTAATTGTCAAGTCAAGAAAAAGGTGGAAAGATCGCAGGACGGCCAAATAACAGAAATTATTTACAGGGGACATCACAATCATGCAATGCCACATTCTAGTTGTCGGGGATCAGTAACTTCAAATGATGAAATGTCAGATATTTCTGAAGCCAATGAAACATGCCATAGAGCTGATGCTGATTCTGCATGGGGAGATATTCAATTACGAGaaaaagatggaaaacatgatcCGGACTGGAAGCTTGATGGTCAAGAAAGGACAAATCCGCCTTCTTCTAGGACCGAGCTTTCAAATCCTACAAAGAGATTTAGATCTCTAGGTATGTATGAATCAGACGAAGCTCGAGAGCATTATTCCACACTTGCTAATCACAATGGTGATAAAGGTGGAGCCACTCAAGCAGTTTCACGACTTGAAGATGATGTTGAAGATGctgaatcaaaattaaaaagaagAAAGAAAGAGAGCTACCCTGGTGAAACAATGGTGCCTTCGAGGGCTGTTCGTGAGCCACGAGTAGTAGTCCAAATTGAGAGTGAAGTGGACATACTAGACGATGGTTATCGCTGGAGAAAGTATGGACAAAAGGTTGTCAAAGGGAATCCAAATCCCAGGAGTTACTACAAATGCACAACTGTTGGATGTAATGTAAGAAAACATGTGGAAAGGGCTTCACACAATctaaaatatatcattattacTTATGAGGGAAAACATAATCATGATGTTCCCACAGCAAGAAATAACTATCATATAAGCTCAAATGGTGGTGCTTTGCCTTCCAATGGTGTTAATGTTCAAGCCTCCGGTATTCCGAAGTCTGAACCTCATCAAACTCTTGTACCTCATTTTGATAGAAATGAGTTTCTGAGGTCAAGTTTAATGGGAAGTTTTAGTAATGATATGAAGTGTGGACCTTCTTCCATATCTCAAATGAAGTATTCTTCATTAAATAGTATCATACCTTATGGAGCCTATGGAACGAATCCTGACCATGCTGTTGCGCCTCAAGCCGGATCTATTGCCTCAATTTTTCCCGAGTTTCCAATGCCGCTACAAATGAATCTTCCCTCATCTGAAAATTTTTCTCTACCTGGAATTAATTTCAACTATGCACAACCAATGAGTTCTGTCCAGTCTTACCTTTCAGGTCAAGTTGTGATGGACATCGATACAGGCTTCCAGGCCTAA	2097	0.3801	MEQHNNNINKSNNNNENKNGFDEIYVSDSKGGDFFDFSPKKSIAERRGFNKNTARINTTRFRIDGFGGTNSSASPTARSPCLTIPPGISPTALLDSPIMLPNSQAMPSPTTGSFAMLPPLIDDGSMLPSITHEQREVDASFKFMPEINLGPNSLSPYLASLNEVSSKCHMMNEAHEDLEMLAQGQQMLDFSVPNDFANNYLDRNRGVHFDNDAKLVDDMFIDVSNVDVPISRSEESSDISTLPEDLIHDEDIRQLLLEEEQKEMSHATSGKTSEDGYNWRKYGQKQVKGSDYPRSYYKCTKSNCQVKKKVERSQDGQITEIIYRGHHNHAMPHSSCRGSVTSNDEMSDISEANETCHRADADSAWGDIQLREKDGKHDPDWKLDGQERTNPPSSRTELSNPTKRFRSLGMYESDEAREHYSTLANHNGDKGGATQAVSRLEDDVEDAESKLKRRKKESYPGETMVPSRAVREPRVVVQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCNVRKHVERASHNLKYIIITYEGKHNHDVPTARNNYHISSNGGALPSNGVNVQASGIPKSEPHQTLVPHFDRNEFLRSSLMGSFSNDMKCGPSSISQMKYSSLNSIIPYGAYGTNPDHAVAPQAGSIASIFPEFPMPLQMNLPSSENFSLPGINFNYAQPMSSVQSYLSGQVVMDIDTGFQA	698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g02023	698	ProSiteProfiles	WRKY domain profile.	481	546	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tsu04g02023	698	Coils	Coil	430	457	-	-
	Tsu04g02023	698	ProSiteProfiles	WRKY domain profile.	268	332	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tsu04g02023	698	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	27	677	IPR044810	GO:0003700
	Tsu04g02023	698	PANTHER	WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1	27	677	-	-
	Tsu04g02023	698	SUPERFAMILY	WRKY DNA-binding domain	271	332	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tsu04g02023	698	MobiDBLite	consensus disorder prediction	1	23	-	-
	Tsu04g02023	698	SUPERFAMILY	WRKY DNA-binding domain	479	546	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tsu04g02023	698	MobiDBLite	consensus disorder prediction	372	405	-	-
	Tsu04g02023	698	SMART	WRKY_cls	486	545	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tsu04g02023	698	SMART	WRKY_cls	273	331	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tsu04g02023	698	Gene3D	WRKY domain	259	333	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tsu04g02023	698	MobiDBLite	consensus disorder prediction	1	22	-	-
	Tsu04g02023	698	Gene3D	WRKY domain	473	539	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tsu04g02023	698	MobiDBLite	consensus disorder prediction	387	403	-	-
	Tsu04g02023	698	Pfam	WRKY DNA -binding domain	487	543	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tsu04g02023	698	Pfam	WRKY DNA -binding domain	274	329	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tsu04g02023	698	MobiDBLite	consensus disorder prediction	424	443	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g02023	Tsu-Chr4	22080469	22103261	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g02023	28	549	WRKY Transcription Factor Family	AT5G56270	40.590	5.19e-96	309

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Tsu04g02023		WRKY	7.6e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g02023	K18835		-	gmx:100800211	761.525