Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02013 ATGAACAAGTGTCTAGGACCACTATGCATACTTTTGTTGGTTCTCTTAGTTGAAGCTGCCCCTCAAGGATCTCTAATCACACACCTTCCTGGTTTTAATGGCAATTTCCTCTCCAACCATTACTCAGGGTATATAAGTATTGATGGAAATGGTGAGAATGGGAAGAACTTGTTCTACTACTTTGTTAGTTCAGAAAGAAATCCAAGTAAGGATCCAGTTGTTCTATGGCTGAATGGTGGACCTGGTTGTTCTAGCTTTGATGGCTTTGTTTATGAACATGGGCCATTCAATTTCGAGGCTGCAAAATCAAAAGGGAAGCTACCCACTTTGCATAACAATCCTTACAGCTGGTCAAAGGTTtccaatataatatatttggaCTCACCCACGGGTGTTGGATTGTCTTACTCAAAGAACATAACAAACTACTTAACTGGGGACTTACAAACTGCTTCTGATACCCATGCTTTCCTCTTAAAGTGGTTTGAGGAATTTCCAGAATTTCAGGCTAATCCATTTTATGTTTCTGGGGAGTCATATGCTGGAATTTACGTACCCACTCtagtttttgaaattgctaaagGAATCCGAAGTCTTACAAAGCCCGTGATCAATTTGAAGGGTTACTTAGTGGGAAACGGTGTCACGGGTTCAACATTTGATAACAATGCTTTTATCCCATTTGTGCATGGAATGGGCCTCATATCAGACACTATGTATGAGGATGTACAAGCTAATTGCAAAGAAAATTACGACTATGATTCTAATACCGAGGACGATACAtgctccaagagcttggaaaAAGTTAGTAGGGTTGTTGCTGATCTTAATGTGTACAATATATTGGAGCCATGCTACCATGACCCTGAAGTTGCAAGAAACAAAAGCTCTAACTTGCCATTGAGTTTCCAAAATTTAGGGAAAACAGAGAGACCTCTTTCAGTGAGAAAGAGGATGTTTGGTAGAGCTTGGCCTTTTAGAGCACCAGTCAGAGATGGCCCTGTTACCTTATGGCCTCAATTAATGGCAGCTGATTTGGGACATGTCCCTTGTGTTAATGATGAAGTAGCACTCGCATGGTTAAATAACGTTGAAGTTAGGAAAGCCATTCACGTTAATCAGGCAAGTAATACATGGGAATTATGCACAGATAGAATAAGTTACGAGCATGATGCTGGAAGCATGATTCCATACCACAAGAATCTAACAAGATTGGGATATAGAGCACTTATATTCAGTGGTGACCATGATATGTGTGTACCATTTACTGGAAGTGAGGCATGGACAAGATCTTTGGGATACAAAATTGTGGATGAATGGAGACCATGGGACTCTAATGAACAAGTTGCTGGGTACTTACAAGCATACGAGAACAACCTTACCTTCCTCACAATTAAGGGAGCTGGGCACACCGTACCGGAATATAAGCCACGGGAGGCACTGGATTTTTACAGCCGTTGGTTGGAaggaaaaccaatataa 1482 0.3934 MNKCLGPLCILLLVLLVEAAPQGSLITHLPGFNGNFLSNHYSGYISIDGNGENGKNLFYYFVSSERNPSKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAAKSKGKLPTLHNNPYSWSKVSNIIYLDSPTGVGLSYSKNITNYLTGDLQTASDTHAFLLKWFEEFPEFQANPFYVSGESYAGIYVPTLVFEIAKGIRSLTKPVINLKGYLVGNGVTGSTFDNNAFIPFVHGMGLISDTMYEDVQANCKENYDYDSNTEDDTCSKSLEKVSRVVADLNVYNILEPCYHDPEVARNKSSNLPLSFQNLGKTERPLSVRKRMFGRAWPFRAPVRDGPVTLWPQLMAADLGHVPCVNDEVALAWLNNVEVRKAIHVNQASNTWELCTDRISYEHDAGSMIPYHKNLTRLGYRALIFSGDHDMCVPFTGSEAWTRSLGYKIVDEWRPWDSNEQVAGYLQAYENNLTFLTIKGAGHTVPEYKPREALDFYSRWLEGKPI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02013 493 ProSitePatterns Serine carboxypeptidases, histidine active site. 460 477 IPR033124 GO:0004185
Tsu04g02013 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Tsu04g02013 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Tsu04g02013 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Tsu04g02013 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 460 473 IPR001563 GO:0004185|GO:0006508
Tsu04g02013 493 Pfam Serine carboxypeptidase 30 490 IPR001563 GO:0004185|GO:0006508
Tsu04g02013 493 PANTHER CARBOXYPEPTIDASE 12 492 - -
Tsu04g02013 493 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Tsu04g02013 493 Gene3D alpha/beta hydrolase 19 324 IPR029058 -
Tsu04g02013 493 Gene3D - 348 493 - -
Tsu04g02013 493 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 12 492 IPR001563 GO:0004185|GO:0006508
Tsu04g02013 493 SUPERFAMILY alpha/beta-Hydrolases 26 492 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02013 Tsu-Chr4 21909173 21917423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02013 356 493 Calmodulin-binding Proteins AT2G22960 49.640 8.62e-43 148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02013 04 21909173 21917423 Tsu08g01005 08 11062796 11065334 PCT