Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01995 ATGGCTTCTATGAACTTGTTGGGTTTCTCTTTGTCACCACAAGAACAACAACACCCTTCAACTCAAGATCAAACGGTGGCTTCTCGTTTTGGCTTTAACCCTCATGATGGTTCTGATGTTCAACAAGGCTTTGATCTCTCTTCTCACTCAacttctcatcatcatcatcattcactCAATAACCTTTCTCACCCTTTTTCCATTTATGAAACTTTTCATACCAATAACAACATTCAAACCACTCAAGattggAAGGAGAACTACAACCAAAACCTACTAATGGGAACATCATGCATTAACCAAAATGTGAATCAACAAGTACAACCAAAGCTAGAAAACTTCCTCGGCGGAAACTCGTTTACCGACCATAACGAATACGGTGGTAACAACTCATATTCTTCATTGCACCTTTCGGCTACTCATCCAGAAGGTGCAACTTGCGGTGCTAGTaccggtggtggtggtggtgatggtagcacaagtaacaacaacaataactcAATAGGTTTATCAATGATAAAAACATGGCTCAGAAACCAACCACCACcagaaaacaacaacaataataataataatgaaagtGGAGCAGCACGTGTGCAAACACTATCACTATCAATGAGTACTGGCTCACAATCAAGTTCATCAGTTCCACTTCTCACTTCAAATGTGATGAGTGGTGAGATTTCCTCATCggaaaacaaacaacaactaCCTACAACTGCTGTAGTACTTGATAGCAACCAATCTAGTGCTGTTGTTGAAACTGTTGTGCCTAGAAAATCCATTGATACTTTTGGACAAAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGATAATAGTTGTAGAAGAGAGGGACAGACTCGCAAAGGAAGACAAGaaaatatggTATTAAAATTTGTTGATGTTGGTTATGTATTTGTAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATACTGGGGaacaactacaacaacaaattttCCCATTAGCCATTATGAAAAAGAATTGGAAGAAATGAAGAACATGACAAGGCAAGAGTACGTTGCCTCATTGAGAAGGAAAAGTAGTGGTTTTTCTCGCGGTGCATCCATTTACCGAGGAGTAACGAGACATCATCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACCTAGGAACTTTCGGCACTCAAGAAGAGGCAGCAGAGGCATATGATGTAGCAGCAATAAAATTCAGAGGACTAAGTGCAGTTACAAATTTTGACATGAGTAGATATGATGTGAAAACCATACTTGATAGTAGCACATTACCAATTGGTGGTGCTGCAAAACGTTTAAAAGACATGGAACAAGTTGAATCATTGAATAAT 1434 0.3563 MASMNLLGFSLSPQEQQHPSTQDQTVASRFGFNPHDGSDVQQGFDLSSHSTSHHHHHSLNNLSHPFSIYETFHTNNNIQTTQDWKENYNQNLLMGTSCINQNVNQQVQPKLENFLGGNSFTDHNEYGGNNSYSSLHLSATHPEGATCGASTGGGGGDGSTSNNNNNSIGLSMIKTWLRNQPPPENNNNNNNNESGAARVQTLSLSMSTGSQSSSSVPLLTSNVMSGEISSSENKQQLPTTAVVLDSNQSSAVVETVVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQENMVLKFVDVGYVFVGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKNMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKTILDSSTLPIGGAAKRLKDMEQVESLNN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01995 478 CDD AP2 384 445 IPR001471 GO:0003700|GO:0006355
Tsu04g01995 478 ProSiteProfiles AP2/ERF domain profile. 271 349 IPR001471 GO:0003700|GO:0006355
Tsu04g01995 478 MobiDBLite consensus disorder prediction 146 168 - -
Tsu04g01995 478 SUPERFAMILY DNA-binding domain 270 351 IPR016177 GO:0003677
Tsu04g01995 478 Pfam AP2 domain 271 341 IPR001471 GO:0003700|GO:0006355
Tsu04g01995 478 Pfam AP2 domain 385 435 IPR001471 GO:0003700|GO:0006355
Tsu04g01995 478 SUPERFAMILY DNA-binding domain 384 445 IPR016177 GO:0003677
Tsu04g01995 478 Gene3D AP2/ERF domain 271 351 IPR036955 GO:0003700|GO:0006355
Tsu04g01995 478 Gene3D AP2/ERF domain 385 445 IPR036955 GO:0003700|GO:0006355
Tsu04g01995 478 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 5 474 - -
Tsu04g01995 478 MobiDBLite consensus disorder prediction 153 168 - -
Tsu04g01995 478 CDD AP2 270 351 IPR001471 GO:0003700|GO:0006355
Tsu04g01995 478 ProSiteProfiles AP2/ERF domain profile. 385 443 IPR001471 GO:0003700|GO:0006355
Tsu04g01995 478 MobiDBLite consensus disorder prediction 1 31 - -
Tsu04g01995 478 PRINTS Ethylene responsive element binding protein signature 272 283 IPR001471 GO:0003700|GO:0006355
Tsu04g01995 478 PRINTS Ethylene responsive element binding protein signature 331 351 IPR001471 GO:0003700|GO:0006355
Tsu04g01995 478 MobiDBLite consensus disorder prediction 1 58 - -
Tsu04g01995 478 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 474 - -
Tsu04g01995 478 SMART rav1_2 385 449 IPR001471 GO:0003700|GO:0006355
Tsu04g01995 478 SMART rav1_2 271 355 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01995 Tsu-Chr4 21688830 21693314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01995 167 470 AP2-EREBP Transcription Factor Family AT5G17430 68.421 1.39e-134 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu04g01995 AP2 4.1e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01995 K09285 - gmx:100526744 583.948