Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01984 ATGTCCTCCTCCAACGCCATCTTCTTCCTCCACCGCAACTTTTCCATCACCACAAAAACCAACCTCCCAAATCTCTTCAAAATCCCTTCCAGACACAGAAACATTGTTATTCATGAAGCTCAAAAAGCCCTCATCGATTACCTCCATGGCACAAGGTGTTTACCTTTTACCTATGCAGAACACATTGCCAACAACTCTCTTTATTCTCTCACCAATCTCATATCAAAGGTAGATTTTTCCCTACCCACTTTCTCTAATAACATTAACAGGGTCTTTAGGTATAACCCCATTAATGAATTTGAAGTCTTTTTTGAAAGCATAGGCATTGATTACAATTTGGTTTCTGGTTTATTGCCTCATGATAAGTTGTTCTTTTCTCAAGATAGGACCCTTTTAGAAGCTGCTTGTACACTTTCTGATTTTGGGTTTCCTTGGGAAAAGTTGGGTGTTTTGTACATGGAGAAAAGTTCTATATTTGAGAAAAGTGTTGAGGATTTGAATTTAAGGCTTTGTAGGTTGAAAAGATTTGGTTTTGGTAATGTTGAAGTTATTGGGATATGTTTGgcttttccttttgttttgaGTGAGGAACTAGGTCAAAAAGGTGCTGCTATTGGGATTGATGGGTTGTTTAGTGATctaaagttgatttttttggattattcTTTGGGAAGTTATGTTGCCGGAAATGTAGATTCTTGGCACGAGGTGTGTAGAAAGTTGCGGttgttttatgatttaattGGATGGAAGGGCAATGTAGGAGAACTCATGGGGAGGAATAAGAGTGTATTTGTTGAACACAAAGAAGATGAGTTAGTACATAAAGTAGAGTATTTAGTAGAGTATTTTTGTAGATTTGGCGTGAAGAAGGAGGAAGTTGCTCAGTTGATTCTACCATGTCCTGAATTGTTGAAGGTTGATTTGGAGAAGCAGGTGATTAATGTGTTGGAGCTGTTGAAACACTGTGGCATGAGCTCTAATGATTTGGTggatataagtaaaaaatttgaTCATGTGTTGGGAACAAATAAAATGGTTAATCTGCCTAATGTGATGAAGGCCATGGGTTTGCAGGAGTGGTTCTTTGAAAAAATCAAAGGTGGACATCATCGGTTGTTAGTGGATTATATCACAAGTTATCCTAATGAAGATCGGGATAAAGATTATCAAGATGGTTTGAGGAGAATTCATAGTTCACGAGCTCGAGTTCATagcattaataaattaaattttttacatgGCTTAGGCTTTGGAGAAAATGCCTTGACTATGAATCTTTTGGATCGTTTGCACGGCACAAGCAGTGAGCTACAAGAAAGATTTGACTGCCTTCTACGCTTAAGGATCGAATTCTCAAAGCTCTGTGTGATGGTAAGAAAAACCCCAAGGATTCTAAACCAAAACTATGAAATTATTGAGAGAAAGGTGAATTTCTTCAACCAGGAAATGGGAAAAACTTTGGACTATGTGGAAACTTTTCCAGCAATGTTGCATTATCACTTGGAGGATCGAGTTATACCTAGGTATAGATTCCATATGTGGCTTATAGAAAAGGGTCTGTCTAGTAGAAGAAAATATTCCATCCAAAGTATGATCACTGACAGTGAAAAGAAATTTGTAGCTCGAGTGTTTAGAATTCATCCAGCTGCTCCAAAACATTGGTTCGAGCAATTCTGTTGCCGTAAATTGCCAATGTAA 1701 0.3616 MSSSNAIFFLHRNFSITTKTNLPNLFKIPSRHRNIVIHEAQKALIDYLHGTRCLPFTYAEHIANNSLYSLTNLISKVDFSLPTFSNNINRVFRYNPINEFEVFFESIGIDYNLVSGLLPHDKLFFSQDRTLLEAACTLSDFGFPWEKLGVLYMEKSSIFEKSVEDLNLRLCRLKRFGFGNVEVIGICLAFPFVLSEELGQKGAAIGIDGLFSDLKLIFLDYSLGSYVAGNVDSWHEVCRKLRLFYDLIGWKGNVGELMGRNKSVFVEHKEDELVHKVEYLVEYFCRFGVKKEEVAQLILPCPELLKVDLEKQVINVLELLKHCGMSSNDLVDISKKFDHVLGTNKMVNLPNVMKAMGLQEWFFEKIKGGHHRLLVDYITSYPNEDRDKDYQDGLRRIHSSRARVHSINKLNFLHGLGFGENALTMNLLDRLHGTSSELQERFDCLLRLRIEFSKLCVMVRKTPRILNQNYEIIERKVNFFNQEMGKTLDYVETFPAMLHYHLEDRVIPRYRFHMWLIEKGLSSRRKYSIQSMITDSEKKFVARVFRIHPAAPKHWFEQFCCRKLPM 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01984 566 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF18, MITOCHONDRIAL 21 559 - -
Tsu04g01984 566 Gene3D Transcription termination factor 3, mitochondrial 280 560 IPR038538 -
Tsu04g01984 566 Gene3D Transcription termination factor 3, mitochondrial 67 279 IPR038538 -
Tsu04g01984 566 Pfam mTERF 436 540 IPR003690 GO:0003690|GO:0006355
Tsu04g01984 566 Pfam mTERF 257 352 IPR003690 GO:0003690|GO:0006355
Tsu04g01984 566 PANTHER CGI-12 PROTEIN-RELATED 21 559 IPR003690 GO:0003690|GO:0006355
Tsu04g01984 566 SMART mt_12 295 326 IPR003690 GO:0003690|GO:0006355
Tsu04g01984 566 SMART mt_12 456 487 IPR003690 GO:0003690|GO:0006355
Tsu04g01984 566 SMART mt_12 149 179 IPR003690 GO:0003690|GO:0006355
Tsu04g01984 566 SMART mt_12 488 522 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01984 Tsu-Chr4 21496082 21497782 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu04g01984 mTERF 6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01984 - - mtr:MTR_7g080620 916.761