Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01974 atggaagaatcATTGGAGAATTTGATTTCCTATATGGAAATGGAAGATGAAGTCTTGAATCCAAGTAGTAACTCATTTGATGAGCAAGAGTTTCTCAAAGATATAATCCTTGAGCAACCAGAATGTGAACCCTCATCATatctttgttccaacaaaatccaaaacATTATTGGTACTACTTCTGAAGGTACAATGAATGTTGAAGGTATTGCCACTAGTCCCTCAAATAGTATTTTGTCCTTTGATGAGACAAGTTTAATGTGTGATCACAAAAATGAAACATTAATCCACAAAAGTAATAGCTCTAACTCAATCATGTCTTTGGAAAGATCATGTGTTGGTTCTTCTCCTCCAGCTTCATATCTTTTATCTTTTGATAACTCAAGTGTTGAACCAATTGTTGAACCAATGTCACATAAAAGAAGGAATATAGTGAAAGAGAAAGCAACAAAGAAGGTTAGAAGATCATGTGAGACAGTACAAGACCACTTGATGGCTGAAAGGAAAAGGAGAAGGGAATTAACTGAGAATATCATAGCACTTTCAGCCATGATACCTGGTTTGAAAAAGATGGACAAGTGTTATGTACTTGGGGAAGCTGTGAGTTACACAAAACAGCTACAAAATCGCATTAAAGAAttggaaaatcaaaacatagtAAATTCAGCAATATTCAAGTGGAAATCAAAAGCttcatcaaataaaaagaaGTACTCAGAATCACCATTGCTCGAGATTGAAGCTAGAGTTGTAGAAAAGAAAGTGCTCATTAGAATTCATTGTGAGAAGCAAAATGACATAGTGCTCAAAATTCATGAATTGCTTGAAAAGTTCAATCTCACTATAACTTCTAGTAGCATCTTACCATTTGGTGCTTCTATTCTTGTAATCAACATTTTTGCTCAgATGGATGAAGAACACAGCATAACCATGGATGACCTTGTTAAAAATCTGAAAAATCATCTGTTGGAGACATGTGAGAGTCAATTGTGA 993 0.3243 MEESLENLISYMEMEDEVLNPSSNSFDEQEFLKDIILEQPECEPSSYLCSNKIQNIIGTTSEGTMNVEGIATSPSNSILSFDETSLMCDHKNETLIHKSNSSNSIMSLERSCVGSSPPASYLLSFDNSSVEPIVEPMSHKRRNIVKEKATKKVRRSCETVQDHLMAERKRRRELTENIIALSAMIPGLKKMDKCYVLGEAVSYTKQLQNRIKELENQNIVNSAIFKWKSKASSNKKKYSESPLLEIEARVVEKKVLIRIHCEKQNDIVLKIHELLEKFNLTITSSSILPFGASILVINIFAQMDEEHSITMDDLVKNLKNHLLETCESQL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01974 330 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 328 - -
Tsu04g01974 330 Pfam Helix-loop-helix DNA-binding domain 162 208 IPR011598 GO:0046983
Tsu04g01974 330 Gene3D - 158 228 IPR036638 GO:0046983
Tsu04g01974 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 220 IPR036638 GO:0046983
Tsu04g01974 330 Coils Coil 197 217 - -
Tsu04g01974 330 PANTHER BHLH TRANSCRIPTION FACTOR 4 328 - -
Tsu04g01974 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Tsu04g01974 330 SMART finulus 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01974 Tsu-Chr4 21270188 21274222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01974 96 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.200 1.60e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g01974 HLH 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01974 - - aprc:113863851 301.982