Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01968 ATGTGTGTGTTTGGGATCTTGGTGACGATGGTTTTGAGTAGTAGAATTTTCAATACTCATGTTATTATTAGTTTCTTTCTGCTGATTATTAGTTGTAGCATGACCTATGGTACTGATAGTGACATCTTCTGCTTAAAAAGCGTACACGAATCGCTAAAAGATCCAAACAATTATCTGGAAAATTGGAATTTTGACAATAAAACTGAAGGGTTTATTTGCAAGTTTACTGGTGTTGAATGTTGGCACCCTGATGAGAATAGGGTTTTGAATCTCAAACTTTCTAATATGGGACTCAAGGGTGAGTTTCCTCGAGGAATTCGAAATTGCTCGAGTTTAACAGGATTAGATTTTTCATTAAACAGCCTCTCTAAAGCCATTCCAGATGATGTATCTAATCTTATCACCTTTGTGGTCACTCTTGATCTATCTTCAAATGATTTCACTGGAGTGATACCTCTGTCGCTTGCTAACTGTACCTATCTTAATAGTATTAACCTTGATCAAAACCAATTTACCGGTCAAATTCCTCCGCAATTCGCTGTGCTCCCACGCCTTAAGTCATTTAGTGTTTCCAATAATCTTTTGTCAGGGCCAGTTCCGAATTTTAAACCAGGTCTAATTCCTGAAGACAGTTTTGCCAATAATTCAGCACTCTGCGGCCGTCCCTTGAAGGCTTGCACGACATCTTCGAAGACTAACACTGCGGTTATAGCTGGTGCAGCTGTTGGTGGTGTGACTCTTGCAGCATTAGGAGTGGCCGTTGGATTGTTCTTCTACGTGCGCCGTGTTTCACACCGGAAAAAGGAAGAAGACCCTGAAGGAAATAAGTGGGCAAGAATCCTAAAGGGAACCAAGAAAATAAAGGTTTCAATGTTTGAGAAgtcaatttcaaaaatgaaCTTGAGTGATCTCATGAAGGCTACTAATAACTTCAGCAAAAGCAATGTTATTGGGACTGGAAGATCAGGAACTGTTTATAAAGCTGTCCTCAACGACGGCACATCACTCATGGTTAAGCGATTACAGGAATCTCAACACTCGGAGCAAGAATTTACAGCCGAGATGGCTACACTAGGAACAGTAAGACATCGTAACTTGGTTCCTCTTTTAGGTTTTTGCCTCGCCAAAAAGGAGAGACTTTTGGTGTATAAAAATATGCCGAATGGTACTCTTCATGATCAATTACATCCTGATGCTGGCGAGTGTACTATGGAGTGGTCTCTAAGGCTCAAAATCGCAATCGGAGCTGCCAAAGGATTTGCATGGCTTCATCACAACTGCAATCCCCGTATTATCCACCGAAACATAAGCTCTAAGTGCATCTTGTTGGACACAGATTTTGAGCCTAAAATTTCCGATTTTGGCCTCGCAAGATTGATGAACCCGATCGATACACATTTGAGTACTTTTGTAAATGGTGAGTTTGGTGATTTAGGTTATGTTGCTCCCGAGTATACAACAACTTTGTTGGCTACTCCGAAGGGAGATGTTTACAGCTTCGGAACTGTGCTTCTTGAGTTGGTAACAGGCGAAAGGCCTACTCATGTGGCAAAAGCTCCAGAAACATTTAAAGGAAATTTGGTAGAATGGATTATGCAGCTCTCAGTCAACTCTAGCCTAAAAGAAGCAATCGATGAATCGTTAGTTGGGAAGGGTGTTGATCACGAGCTTTTTCAGTTTTTGAAGGTTGCGTGCAACTGTGTTACATCGACACCAAAGGAGAGGCCGACTATGTTTGAAGTATATCAGTTTCTAAGAGAAATTGGGAGTCGATATAATTTCATAACTGAAGATGAGATAATGGTACTTACAGATGATGGCAATGCTGGTAAGTTGGAAGAACTTATTGTAGCGCGATAG 1860 0.4059 MCVFGILVTMVLSSRIFNTHVIISFFLLIISCSMTYGTDSDIFCLKSVHESLKDPNNYLENWNFDNKTEGFICKFTGVECWHPDENRVLNLKLSNMGLKGEFPRGIRNCSSLTGLDFSLNSLSKAIPDDVSNLITFVVTLDLSSNDFTGVIPLSLANCTYLNSINLDQNQFTGQIPPQFAVLPRLKSFSVSNNLLSGPVPNFKPGLIPEDSFANNSALCGRPLKACTTSSKTNTAVIAGAAVGGVTLAALGVAVGLFFYVRRVSHRKKEEDPEGNKWARILKGTKKIKVSMFEKSISKMNLSDLMKATNNFSKSNVIGTGRSGTVYKAVLNDGTSLMVKRLQESQHSEQEFTAEMATLGTVRHRNLVPLLGFCLAKKERLLVYKNMPNGTLHDQLHPDAGECTMEWSLRLKIAIGAAKGFAWLHHNCNPRIIHRNISSKCILLDTDFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTTTLLATPKGDVYSFGTVLLELVTGERPTHVAKAPETFKGNLVEWIMQLSVNSSLKEAIDESLVGKGVDHELFQFLKVACNCVTSTPKERPTMFEVYQFLREIGSRYNFITEDEIMVLTDDGNAGKLEELIVAR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01968 619 PANTHER LRR RECEPTOR-LIKE KINASE 15 598 - -
Tsu04g01968 619 CDD STKc_IRAK 317 588 - -
Tsu04g01968 619 Gene3D Ribonuclease Inhibitor 102 235 IPR032675 -
Tsu04g01968 619 Gene3D Ribonuclease Inhibitor 40 101 IPR032675 -
Tsu04g01968 619 PANTHER RECEPTOR-LIKE PROTEIN 55 15 598 - -
Tsu04g01968 619 CDD TM_EGFR-like 229 268 - -
Tsu04g01968 619 Gene3D Transferase(Phosphotransferase) domain 1 386 605 - -
Tsu04g01968 619 Gene3D Phosphorylase Kinase; domain 1 272 384 - -
Tsu04g01968 619 SUPERFAMILY Protein kinase-like (PK-like) 288 585 IPR011009 -
Tsu04g01968 619 Pfam Leucine rich repeat N-terminal domain 39 81 IPR013210 -
Tsu04g01968 619 SUPERFAMILY L domain-like 39 203 - -
Tsu04g01968 619 Pfam Protein tyrosine and serine/threonine kinase 314 585 IPR001245 GO:0004672|GO:0006468
Tsu04g01968 619 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01968 Tsu-Chr4 21182218 21185435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01968 23 606 Receptor kinase-like Gene Family AT3G28450 46.374 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Tsu04g01968 PK_Tyr_Ser-Thr 4.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01968 - - gmx:100817267 960.674