Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01960 ATGGCTTTCATTCCAGAAAAACAAACTGAACAATTTTGCATAGATTATGCCAATGAGAGGCTTCAACAACATTTTAAACAACATCTGTTTAAACTTGAGCAGGAGGACTGTGAACCGGATGGCATTTGCTTGGATCTATTTAAGAAGAAACCTCTCAGTCTATTCTCGTTATTGGATGAGGAATCAAATCTCACCGAGGCTTCTGATTTAACATTTTCCAACAAACTAAAGAATCTTCTGGATGTTAATCATTGCTTCAAAGAGGAAAGAGGCGGAGCTTTCAGTGTTCGTCATTATGCAGGGGAGGTTAGTTTATGA 318 0.3805 MAFIPEKQTEQFCIDYANERLQQHFKQHLFKLEQEDCEPDGICLDLFKKKPLSLFSLLDEESNLTEASDLTFSNKLKNLLDVNHCFKEERGGAFSVRHYAGEVSL 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01960 105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 103 IPR027417 -
Tsu04g01960 105 ProSiteProfiles Myosin motor domain profile. 1 105 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu04g01960 105 PANTHER MYOSIN 9 103 - -
Tsu04g01960 105 PANTHER MYOSIN-2 ISOFORM X1 9 103 - -
Tsu04g01960 105 Gene3D - 6 104 - -
Tsu04g01960 105 Pfam Myosin head (motor domain) 10 104 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01960 Tsu-Chr4 21130838 21132065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01960 10 103 Myosins gene family AT5G54280 65.094 1.20e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01960 K10357 - csin:114265238 134.035