Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01959 ATGAAGGGTATTAAGAAGGAAGAAAGTAGATGTGCACAAATGACAATCTTTTATGAGGGGAAAGTGACTGTGCTTGATGATATTCCAGATGAAAAAGCCAAGGACATTATGGTCTTTTATATCCACAACTATGCTGCTCATCCCTCATTTCTTACTGGAAATTCTGCCAATAATTTTGTTCAAGTAGCATCCACTCTTCCTGTTATTTATGaTTTACCAATGGTTAGGAAAGCTTCTCTTCATTGCTTCTTGGAGAAAAGGAAGAATATAATTGTTGCTAGGGCACCATATCAAACAACTAATCCAGCAACAACGACAATTGGTGAATCATAG 333 0.3664 MKGIKKEESRCAQMTIFYEGKVTVLDDIPDEKAKDIMVFYIHNYAAHPSFLTGNSANNFVQVASTLPVIYDLPMVRKASLHCFLEKRKNIIVARAPYQTTNPATTTIGES 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01959 110 Pfam tify domain 12 37 IPR010399 -
Tsu04g01959 110 Pfam Jas motif 73 98 IPR018467 -
Tsu04g01959 110 ProSiteProfiles Tify domain profile. 7 42 IPR010399 -
Tsu04g01959 110 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 6 100 IPR040390 -
Tsu04g01959 110 PANTHER PROTEIN TIFY 10A 6 100 - -
Tsu04g01959 110 SMART tify_2 7 42 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01959 Tsu-Chr4 21126128 21127135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01959 6 103 Tify Gene Family AT1G19180 34.454 1.11e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tsu04g01959 tify 5.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01959 K13464 - gmx:100800709 85.1149