Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01958 atgaaaaccttgttcttgttcttgtccttatcctttttgtttatcttcttcttcttctcctcacAAGCATctcaacattttctctttcacaaCAACAATAGAAGAATCCTTCATGAACCCTTTGTTCCATTGAACTCTCTTCCTCCATCTCAACCATCAAAATcaccaccacaaccacaaccacaaccactTCATTCTCCACCTTCAACCTCAAACACTAAACACCCATTTTCCACTACCATTCCCACTGACTACAACAACCCAAATCAAGAcccaaaccaaaaccaaaatcaatcaCCATTTTTCCCAAACTACCCTctttcaccaccaccaccatcaccactCACTTTTGCTACGTTTCCAGCTAACATCTCTGCCCTAATACTCCCTCACACTCCTCAACCAGCTTCAACTTCCAACAAACTCCTCCCTATAGCACTCTCCGCTACTGCCATTGCTGCAGTAGTTGTTACAATCTCAGCTTTCCTTTACTTCCGCCGACGTTTCCATAACCGTCGTACTTCCACTGACAGCAAAACTCTAAGATCCGATAGCAGCCTCGAGCTTTTCCCACGCAATGTCCAAACTGCCGGCGATGTTGCAGGAAATGCTTCCGATTTTCTTTACCTCGGAACCGTGGTGAACTCGCGCCGAATCGATGACGCTCCTCGTGGTGGAAGTTCGGTGTCTCGGAAACTTGAATCGCCGGAGCTTCGGCCTCTTCCGCCGTTAGTGCGGCTTCCCGCACCTCCACCGCCATTGCAGCGTGAAGACAGTGActctgatgaagaagatgaggaaTTTTACTCGCCGAGAGGCTCCTCTCTTGGTGGCCGAGAAAGCTCCGGTGGAACTGGTTCATCTTCCCGGAGAGCGTTCTCCGCCATTGCTGCTGTAAGAAGCGGCGAATCAAGCTCAATTTCATGCTCTTCTGCTTCTTTCTGTTCGCCGGAGCATTCTCTTTCGGCTAGTGTCTCACCGCCGGCGAGTTCCAGTCCCCGGAGAACACAACAAAAATCGCCTGAAACCACAACATCACACAACACCGTAACCGTTGCCTCATCACCGATTCACAACCAACAGTTGCAATACAGTTCTTCTTCATCGTTCTCTTCATCACGTTCAACACCAGAGAGAGATTTTgatgaacaaaaagaaaaagaaaaggctTCTTCTATATCAACAAATGCacattcaaaatcatcatcattgtCATTACAAGAGAGATTTATGGAGAAAAATGACAATGCTTCTTTATCAGAACAACCACAAAGGCAATCTAATGCTTCATCTTCAGTTTTTTCTCTTCCTTCTTCACCTGAGAAAATGATGCATCATCAAGCTTTCGATCAATCTCCGAGAATGTCAAGTGTTTCGGACGGGTCAAAGCTACACGGTCTGTCATCATTGCCTCTATCACCCGCCCTACTTTCATCGCCAGAAACAGAAAGGGGAGGGTTTAGCTGCAATTCAAACAGATGGGGAACATTTTCTTATGCCGTGCCTGCGCCACAGAGGAAACATTGGGAGATTCCGCTTCCTGCGAAGCCCATTGTTTCACCACCACCGCCTCCTCCTCCTCTGCCGCGTCCGCGGCAGAGGAGGCATTGGGAAATGTCAGCAACCTCAGCGATTGTTGATCAGCCTCGATCTAGTTTGATGCCACCGGAGTTACTACCTCCTTCGAGGCCTTTTGTGTTGCAAAACCAAACAAGTAATGAGTGTTTAAGGGAAACTGAAGAGAGTTTGAAACCTAAATTGAAGCCATTGCATTGGGACAAAGTGAGAACAAACTCTGATCGTGAAACAGTGTGGGATCAGATGAATTCTATGTCGTTTAAATTTAATGAGGAAATGATTGAGACATTGTTTGTAGCAAACACATCAAACCAAAAACCCAAGGATGCTGTTCCATGGTCCGTTCTTCCCCTGCCAAATCAGGATGGAAGAGTACTAGATCCGAAAAAGTCTCAAAATATTGCAATCTTGCTCAAGGCTCTTAATGTCACAATAGAAGAAGTGTGTGAAGCACTTTTAGAAGGTAGTAGTGATACACTTGGCGCAGAACTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAGCGTAAACTGAAGGAACATAAAGATGACTCACCAACTAAGCTTGATCACGCTGAGAACTTTTTGAAGGCAGTGCTTGATATACCTTTTGCATTTAAAAGGGTTGAAGCAATGCTTTACATGGTCAATTTTCAATCTGAAGTAGAGTATCTTAGAAAATCATTTCAAACTCTAGAGGCTGCCTGCGAAGAACTGCGGAATTGTAGAATGTTCTTGAAGCTTCTAGAGGCTGTACTTAAAACTGGGAACCGCATGAATGTGGGAACAAATCGTGGTGATGCAGAGGCCTTCAAGCTTGATACACTTCTAAAATTGGCTGATGTAAAAGGCGCGGATGGGAAAACCACTCTACTTCATTTTGTCGTACAGGAAATTATTAGAACTGAAGGCGCCCGTCTCTCTGGTACTAATCAAATTACAAGCTCTACTATAACCGAAGAAGTTAAGTGTAGGAGACTAGGCCTACAAGTTGTGTCTAATCTGAGTTCGGAGCTATCAAATGTAAAGAGGGCTGCTACTATGGATTCCGAAGCTCTCAGCGGCGATCTCTTTAAACTTTCCAAAGGAACTACAAATATAGCTGAAATTGTGCAATTAATTGAAAAGCTGGGATCTGATGAAAGCGGTCAGAAATTTACAGAATCGATGAACACATTCATTAGAATGGCTGAGGAGGAAATTCTGAAAATTCAAGCTCAAGAAAGTGTTACTATGACCCTTGTGAAGGAGATTACCGAATATTTTCATGGGAATTTAGCAAAGGAAGAAGCTCATCCATTCAGAATCTTCTTAGTTGTAAGAGATTTTTTAGCCGTTCTTGACAGGGTCTGCAAAGAAGTTGGTATGGTAAACGAGCGAACTACGGTTAGTTCAGCTCATAAATTTCCTGTTCCAGTTAATCCAATGCTTCCGCAACCTCTTCCTGGATTATATGGGAGGAAAGATTGTAGTAACTCTTCCGATGATGAAAGTCGATCACCTTAG 3093 0.4096 MKTLFLFLSLSFLFIFFFFSSQASQHFLFHNNNRRILHEPFVPLNSLPPSQPSKSPPQPQPQPLHSPPSTSNTKHPFSTTIPTDYNNPNQDPNQNQNQSPFFPNYPLSPPPPSPLTFATFPANISALILPHTPQPASTSNKLLPIALSATAIAAVVVTISAFLYFRRRFHNRRTSTDSKTLRSDSSLELFPRNVQTAGDVAGNASDFLYLGTVVNSRRIDDAPRGGSSVSRKLESPELRPLPPLVRLPAPPPPLQREDSDSDEEDEEFYSPRGSSLGGRESSGGTGSSSRRAFSAIAAVRSGESSSISCSSASFCSPEHSLSASVSPPASSSPRRTQQKSPETTTSHNTVTVASSPIHNQQLQYSSSSSFSSSRSTPERDFDEQKEKEKASSISTNAHSKSSSLSLQERFMEKNDNASLSEQPQRQSNASSSVFSLPSSPEKMMHHQAFDQSPRMSSVSDGSKLHGLSSLPLSPALLSSPETERGGFSCNSNRWGTFSYAVPAPQRKHWEIPLPAKPIVSPPPPPPPLPRPRQRRHWEMSATSAIVDQPRSSLMPPELLPPSRPFVLQNQTSNECLRETEESLKPKLKPLHWDKVRTNSDRETVWDQMNSMSFKFNEEMIETLFVANTSNQKPKDAVPWSVLPLPNQDGRVLDPKKSQNIAILLKALNVTIEEVCEALLEGSSDTLGAELLESLLKMAPSKEEERKLKEHKDDSPTKLDHAENFLKAVLDIPFAFKRVEAMLYMVNFQSEVEYLRKSFQTLEAACEELRNCRMFLKLLEAVLKTGNRMNVGTNRGDAEAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLSGTNQITSSTITEEVKCRRLGLQVVSNLSSELSNVKRAATMDSEALSGDLFKLSKGTTNIAEIVQLIEKLGSDESGQKFTESMNTFIRMAEEEILKIQAQESVTMTLVKEITEYFHGNLAKEEAHPFRIFLVVRDFLAVLDRVCKEVGMVNERTTVSSAHKFPVPVNPMLPQPLPGLYGRKDCSNSSDDESRSP 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01958 1030 MobiDBLite consensus disorder prediction 305 375 - -
Tsu04g01958 1030 MobiDBLite consensus disorder prediction 42 106 - -
Tsu04g01958 1030 ProSiteProfiles Formin homology-2 (FH2) domain profile. 577 1002 IPR015425 -
Tsu04g01958 1030 MobiDBLite consensus disorder prediction 275 290 - -
Tsu04g01958 1030 MobiDBLite consensus disorder prediction 376 393 - -
Tsu04g01958 1030 MobiDBLite consensus disorder prediction 1009 1030 - -
Tsu04g01958 1030 MobiDBLite consensus disorder prediction 67 102 - -
Tsu04g01958 1030 MobiDBLite consensus disorder prediction 305 463 - -
Tsu04g01958 1030 Pfam Formin Homology 2 Domain 581 976 IPR015425 -
Tsu04g01958 1030 PANTHER FORMIN-LIKE PROTEIN 1 13 1030 - -
Tsu04g01958 1030 Gene3D Formin, FH2 domain 573 986 IPR042201 -
Tsu04g01958 1030 MobiDBLite consensus disorder prediction 394 438 - -
Tsu04g01958 1030 MobiDBLite consensus disorder prediction 45 66 - -
Tsu04g01958 1030 SUPERFAMILY Formin homology 2 domain (FH2 domain) 521 987 - -
Tsu04g01958 1030 PANTHER FORMIN-RELATED 13 1030 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Tsu04g01958 1030 SMART it6_source 577 991 IPR015425 -
Tsu04g01958 1030 MobiDBLite consensus disorder prediction 220 290 - -
Tsu04g01958 1030 MobiDBLite consensus disorder prediction 241 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01958 Tsu-Chr4 21113237 21117395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01958 555 1017 FH2 protein (formin) Gene Family AT3G25500 71.698 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01958 - - gmx:100801837 996.112