Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01950 ATGGCCGGCATAGACTTGGGTTCAGCATCACAACACTTTGTTCATCGTCTCCAACGCCCTGACCTTGAAGTTCATGATGAGAGTCAAGATCAAGAtggaaacaacaacaaccatgAAGGGCTTGACCTAGTTTCACCAAATCATGGTCTTGGTGATGTTGTTGGTCGTAGACCCAGGGGAAGACCTCCAGGCTCAAAGAACAAACCTAAACCACCAGTGATCATCACAAGAGAGAGTGCAAACACACTTAGGGCTCACATCCTTGAGGTTAGTAGTGGTTGTGATGTGTTTGACTCTGTGGCTACCTATGCAAGAAAGCGTCAAAGAGGGATCTGTGTCCTTAGTGGTAGTGGAACTGTCACTAACGTGACCCTGCGACAGCCAGCTGCTGCAGGATCTGTGGTGACACTTCACGGAAGATTTGAGATATTATCTTTATCTGGGTCGTTTCTACCACCCCCGGCTCCACCTGGTGCTACAAGTTTGAGTGTGTTCCTTGGTGGAGGTCAAGGTCAAGTTGTGGGAGGAAATGTTGTTGGTCCTTTGGTTGCTTCTGGGCCGGTTATTGTTATTGCTTCATCTTTCACTAACGTAGCGTATGAGAGGTTACCGTTAGATGAAGATGAATCTCTTCAGATGCAACAAGGGCAATCATCTGcaggtggtggtgatggtgtTAATAACGCTTTTCCCGATCCATCTTCGGGGCTTCCATTCTTCAATTTACCTCTAAATATGCCTCAATTGCCCGTGGATGGATGGGCTGGAAACTCTGGTGGAAGACAATCTTATTGA 795 0.4465 MAGIDLGSASQHFVHRLQRPDLEVHDESQDQDGNNNNHEGLDLVSPNHGLGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGSVVTLHGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEDESLQMQQGQSSAGGGDGVNNAFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01950 264 MobiDBLite consensus disorder prediction 209 230 - -
Tsu04g01950 264 Gene3D - 83 218 - -
Tsu04g01950 264 ProSiteProfiles PPC domain profile profile. 80 217 IPR005175 -
Tsu04g01950 264 MobiDBLite consensus disorder prediction 210 224 - -
Tsu04g01950 264 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Tsu04g01950 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 264 - -
Tsu04g01950 264 MobiDBLite consensus disorder prediction 24 73 - -
Tsu04g01950 264 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 211 - -
Tsu04g01950 264 PIRSF ESCAROLA 4 239 IPR014476 GO:0003680
Tsu04g01950 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 264 IPR014476 GO:0003680
Tsu04g01950 264 CDD DUF296 84 166 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01950 Tsu-Chr4 21037036 21037830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01950 1 264 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.983 2.26e-101 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01950 - - gmx:100814613 427.172