Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01947 ATGTTCTCAGAGTTGATGAACTATTTGACAACGTGTTTTCGGCCACGTGTGGTTCGATATACACGAAGTGGTTCAGATTCTGGTGGTAAACAGGATGGACTTTTGTGGTACAAAGACTTGGGGAAGCATTTGAAtggtgagttttcaatggctgtGGTCCAAGCCAACAACTTACTGGAGGACCAGAGCTATCTTGAATCGGGTAGTTTGAGTTCCAATGATTCTGGACCGTACGGTACTTTTTTCGGTGTTTATGATGGGCATGGAGGACCTGAGACATCAAGGTTTATCAATGATCACTTAGTTCACCATCTCAAGAGGTTTGCTGCAGAGCAACAAACAATGTCGGTGGATATAATTCGCAAGGCAATTCAAGCAACAGAAGACGGTTTTATGTCTCTTGTTGCTAAACAGTGGTCAATGAAACCACAAATTGCATCTGTTGGGTCATGCTGTCTTGTTGGTGTAATTTGTGATGGCACTCTTTATATAGCAAATCTTGGAGATTCCCGGGCCGTTTTAGGAAGAGCAGTCAAAGCAACTGGGGAGGTTTTAGCTGTGCAATTGTCAACAGAGCACAATGCAGCAATAGAGTCTATAAGACACGAGCTGCAAGCTTCACACCCTGATGATTCAAACATTGTTGTTTTGAAGAATAATGTATGGCGTGTGAAGGGCCTAATACAGATATCTAGATCTATTGGCGATGTATATCTGAAAAAAGCTGAGTTCAATAGAGAACCACTATATGCAAAGTTTCGACTTCGTGAGCCGTTCAAGAAGCCAATATTGAGCTCAGAACCATCAATATCTGTTCATCAGTTGCAGCCACAAGATCAGTTTATTATATTTGCATCTGATGGGCTCTGGGAGCACCTTAGCAATCAAGAAGCGGTTGATATAGTTCAAAATAATCCCCACTCTGGAATTGCGAGGAGACTTGTGAAATCTGCACTTCAAGAAGCAGCAAAGAAGAGAGAAATGAGATATTCAGACTTAAAAGAGATTGAACGTGGGATTCGTAGGCATTTTCACGATGATATCACGGTGATTGTTGTGTTTATCGACTCAAATCTCGTGAGTAGTGCAAGCAATGTTAAGTTCAATAATATTTCCGTTCGAGGGGGCGGTGTCAACTTTCGTCCTAACACACTGGCACCGACATAA 1167 0.413 MFSELMNYLTTCFRPRVVRYTRSGSDSGGKQDGLLWYKDLGKHLNGEFSMAVVQANNLLEDQSYLESGSLSSNDSGPYGTFFGVYDGHGGPETSRFINDHLVHHLKRFAAEQQTMSVDIIRKAIQATEDGFMSLVAKQWSMKPQIASVGSCCLVGVICDGTLYIANLGDSRAVLGRAVKATGEVLAVQLSTEHNAAIESIRHELQASHPDDSNIVVLKNNVWRVKGLIQISRSIGDVYLKKAEFNREPLYAKFRLREPFKKPILSSEPSISVHQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNNPHSGIARRLVKSALQEAAKKREMRYSDLKEIERGIRRHFHDDITVIVVFIDSNLVSSASNVKFNNISVRGGGVNFRPNTLAPT 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01947 388 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Tsu04g01947 388 Pfam Protein phosphatase 2C 72 324 IPR001932 -
Tsu04g01947 388 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Tsu04g01947 388 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Tsu04g01947 388 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 382 - -
Tsu04g01947 388 PANTHER ALPHABET, ISOFORM E-RELATED 5 382 - -
Tsu04g01947 388 CDD PP2Cc 48 355 IPR001932 -
Tsu04g01947 388 Gene3D - 38 367 IPR036457 -
Tsu04g01947 388 SMART PP2C_4 41 353 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01947 Tsu-Chr4 21007005 21010574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01947 1 388 PP2C-type Phosphatase Gene Family AT4G38520 72.680 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01947 - - jre:109006616 656.751