Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01939 ATGGCTTCCTCACCACCTTCTTCACCAACTGACTCCAATCCACCATCCGCCGTTCCTCTCCCTCTCTCGTTACCTGCcccaccaccacaaccaccaaCAACAACCTCTTCCCGTCGTCTTCCTCCTCCTTGCTGGACACCTGAAGAAACATCTGCCTTAATCGATTCTTATCGTGACAAATGGTATTCTCTTGGTCGAACGAATCTCAAAGCAATTCATTGGCAAGAAGTTGCTGACGCCGTTACCGTTAAGTGCCCTAACGCTTCACCGACAAACAAAACAGCCGTTCAGTGCCGTCATAAAATGGAAAAACTTCGTAAACGTTACCGATCTGAGATCCAACGGCTTAGATCTCTTCCTGTTCCTAGATctcgttcttcttcttcttgggtTCATTTTAAATCTATGGATTCTATGGAAAAAGGTCCTTCTCCTCCTTCTCCTTCTCCACCAccaatgaaaattgaaaaccctAATCATCTTAATCACCGTGAAACCCTAGATTATAACGATGATCTTGACGATGATGATTTATATGAGGAACTCAGAAGTGCTGCTGGTGCTGGTAGTGGTGGATCTGGAAACAGCAGGAGTATCGATAAACTTTATCGGAATGGAGTTtccggtggtggtggtggaccTCCCGGTGGTGGTTTTCGGATTAGGATTCCGACTGGCGTGAGCGTGGCGCAACCTGGATCGAAATTCTTCGCTGGTTATAATctgaaaatgaataataataatcaatcgGAATCTGGTTCTAGGATCAACGGTGGAATGAGGCTTATTAAGGAGAGAGTTGGGTTGGGcaagagggagagggagagagaggtagagagagaaagagatccAATTGGTGAAATGGTGAATGCCATTAAGGTTTTGAGAGATGGGTTTGTGAGAATGGAGcaaatgaaaatggagatggCTAGAGAGATTGAAACTATGCGTATGGAGATGGAGATGAAGCGCACTGAAATGATTCTTGAGTCTCAGCAGAGGATTGTTGAAGCTTTTGCGAAAGCTGTTTCGGAGAAGAACAAGAAGAGGAAACTACATAAGGGTAATAgtaacaacaataacaatagcAACACCAATAACAACATAGCTTCACCCTCAGAATCGTAG 1128 0.3715 MASSPPSSPTDSNPPSAVPLPLSLPAPPPQPPTTTSSRRLPPPCWTPEETSALIDSYRDKWYSLGRTNLKAIHWQEVADAVTVKCPNASPTNKTAVQCRHKMEKLRKRYRSEIQRLRSLPVPRSRSSSSWVHFKSMDSMEKGPSPPSPSPPPMKIENPNHLNHRETLDYNDDLDDDDLYEELRSAAGAGSGGSGNSRSIDKLYRNGVSGGGGGPPGGGFRIRIPTGVSVAQPGSKFFAGYNLKMNNNNQSESGSRINGGMRLIKERVGLGKREREREVERERDPIGEMVNAIKVLRDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSEKNKKRKLHKGNSNNNNNSNTNNNIASPSES 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01939 375 Pfam Myb/SANT-like DNA-binding domain 43 139 IPR044822 -
Tsu04g01939 375 MobiDBLite consensus disorder prediction 116 174 - -
Tsu04g01939 375 SMART 118neu2 52 144 IPR006578 -
Tsu04g01939 375 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 3 353 IPR044823 -
Tsu04g01939 375 MobiDBLite consensus disorder prediction 120 134 - -
Tsu04g01939 375 MobiDBLite consensus disorder prediction 1 48 - -
Tsu04g01939 375 MobiDBLite consensus disorder prediction 1 38 - -
Tsu04g01939 375 Gene3D - 45 111 - -
Tsu04g01939 375 Coils Coil 99 119 - -
Tsu04g01939 375 MobiDBLite consensus disorder prediction 356 375 - -
Tsu04g01939 375 ProSiteProfiles Myb-like domain profile. 45 106 IPR001005 -
Tsu04g01939 375 PANTHER TRANSCRIPTION FACTOR 3 353 - -
Tsu04g01939 375 MobiDBLite consensus disorder prediction 344 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01939 Tsu-Chr4 20933168 20935807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01939 44 139 Trihelix Transcription Factor Family AT3G14180 31.250 7.47e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu04g01939 Myb_DNA-bind_4 2.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01939 - - cam:101501151 452.595