Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01937 ATGCCTCCGAAAGTGGTAAAAAGAGGTGCTGCAGCCAAGAAAGCGAAACTTTCTTCAAAAACTGCAATTCAGAATCAGCAGCAAGAACCTGAACCTGTTAAGAATCATGATGATATTCCTGTTGCTGATGTTGAAACAAACAATTTGGCTCAAGAGATTGTGCCTAATGGTTTGGATGTGGTGGAAAACAATGGAGAGGAGATTAAGGAGTCCTTAGATGAATATGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCATGAGTATGATCATGAAGAGTATGTTGATGATGACTATGATGAGGGAGAAATTGAACAAGATGAGGGTCAGGAGGTTGGTGATGAAGTGGAGGAAGAACCGGAAGAGAATGTGGATGAAGAAGAGGGTGATACAGGCGATGAAGAAGTTGAATATATTTATGAAGAAGTTGagggtgatgatgatgatgccgTCGCTGCTAATGATGCCGCCGCCGCTGCGTCTAATgatgctgctgctgctgctgatGTTGATGATGAGCATGCCAGTGAGGAGAACAGTCATGAACATCTGGCTGGTGTGGAGGAAGAGGAACAAGGTGAAGTTAGAAAGGAGAGGCAGAAGAAAAAGGAACTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCAACGGAGCATGATCTGAGGAAGGTTTTCGGTAAAGTTGGGAAGATTACTGAAGCCAGGCTGATGATGAATCCTCGGACTAAAAAGAACAAGGGATTTGCATTATTGCGTTTTGAAACTGTTGAACAAGTGAAAAGAGCATTGGCAGAGCTAAAACATCCAGTGATTAATGGCAAACAATGTGGCATCACTTCATGTCAGGATAGTGATACTCTCTATTTAGATAACATATGCAAGACATGGAAAAAGGAAGCTTTAATGGAGAAATTGAAACATTTTGGAGTTGAAAGTTTCAAGGATTTGACTTTAGTAGAAGATGGTAACAATGAGGGTAGGAACTGTGGGTTTGcatttttggaattttcttcTCGTTCAGATGCTAAGGAAGCCTATAAGCGATTGCAGAAGACAGATTTTGGAGATGATAAGCCTTCAGAGGTTTCCTTTGCAGACTCCTTTATTGACCTGGGTGATGATGTCATGGCACAGGTTAAAACTGTATTTATTGATTTACTGCCTCCTTCATGGGATGAAGATTATGTCCGAGATCTTCTTAAGAAATATGGGGAGGTTGAAAAAGTTGAGCTTGCTAAGAACATGCCAGCTGCTCGCAGGAAGAATTATGGATTTGTTACGTTTGCTACGCATGCTGCTGCTGTGGAATGTGCTGAGAGCATCACCAGTGCAGGATTAGGGGAAGGCAGCAAAAAGgcaaaagttagggctAGATTGTCGAGACCTCTTCAGAAAATTCATGGAAAACATGTTACTCACAAGGACTTTTCTAGCCAAAAGTCTGGAAGATTGGCAAGGCCTTCACGTAGTGGACCTTTACCACAGAGTCGACCTTTACCACGGAATCGACCTATACCACAGAGTCGGCCTGCTCGTGTGGTGAGAAGATTTGGAAATCATATTCCACCAGTTAGACCTTCTAGTGTGAGAAATAGACGTCCTGTCACATCAATGCCATTAAGAGCTAGGCCAGTCACTCCTCCAGCTAGATCATATGACAGGAGATTGCCCGCTGCATATCCAAAAAGTAGCATGAAGAGAGCTTATGACCGACCTGTAGATCTTCCACCTCCAAGAAGTAGAGTTTCTGTAGATTATGGTTCTCAGATATCCTCTGAAAGACGTCCATCTTCTTACAGAGATTATCCAGCCCGTGACTCTGGCTACTCTGACCTGCATAGGAATGCATCTCATACTGCACCAAGGAGGGGTTATCTGGATGATGGCTATGATCGAAGACTTGAGAGGCCTCCTCCTCCACCTCCCCATTTAAGTTACCGTGAAGGACGCCCCCGTGATTATGAGACGCTATCTGGCTCAAAACGTCCTTATGCTTCAATAGATGATATTTCTCCACGGTATGCTGATGCTCGCCAATCAAGATCTCGTTTAGACTATGACTATGGAGGTAGTGGTTCACAATATAGAGAGGCTTATCACGATAGGCTTGGAAGATCTAGTTTGGGATATAGTGGCAGTAGAAGTTCTATATCTATTCAAAACTCACATGGGACATACAGCAGGCGACATGACACGAGTTATGGTGGAGGTTCTATTGGTGGTAGTGATGGGGGTATCTACTCATCAAGTTATGGTCGCGATTATGTATCTCGTGAAAGTGATGTTGGTGGGAGCTCGTATTCGTCTATGTATTCTAGCAGGGGTATGAACGGTAGTAGCAGTTATAcgggtggtggtggtggtggatctAGATCTTATTATTGA 2388 0.4125 MPPKVVKRGAAAKKAKLSSKTAIQNQQQEPEPVKNHDDIPVADVETNNLAQEIVPNGLDVVENNGEEIKESLDEYEKDEHLDLEDNYHEYDHEEYVDDDYDEGEIEQDEGQEVGDEVEEEPEENVDEEEGDTGDEEVEYIYEEVEGDDDDAVAANDAAAAASNDAAAAADVDDEHASEENSHEHLAGVEEEEQGEVRKERQKKKELEVFVGGLDKDATEHDLRKVFGKVGKITEARLMMNPRTKKNKGFALLRFETVEQVKRALAELKHPVINGKQCGITSCQDSDTLYLDNICKTWKKEALMEKLKHFGVESFKDLTLVEDGNNEGRNCGFAFLEFSSRSDAKEAYKRLQKTDFGDDKPSEVSFADSFIDLGDDVMAQVKTVFIDLLPPSWDEDYVRDLLKKYGEVEKVELAKNMPAARRKNYGFVTFATHAAAVECAESITSAGLGEGSKKAKVRARLSRPLQKIHGKHVTHKDFSSQKSGRLARPSRSGPLPQSRPLPRNRPIPQSRPARVVRRFGNHIPPVRPSSVRNRRPVTSMPLRARPVTPPARSYDRRLPAAYPKSSMKRAYDRPVDLPPPRSRVSVDYGSQISSERRPSSYRDYPARDSGYSDLHRNASHTAPRRGYLDDGYDRRLERPPPPPPHLSYREGRPRDYETLSGSKRPYASIDDISPRYADARQSRSRLDYDYGGSGSQYREAYHDRLGRSSLGYSGSRSSISIQNSHGTYSRRHDTSYGGGSIGGSDGGIYSSSYGRDYVSRESDVGGSSYSSMYSSRGMNGSSSYTGGGGGGSRSYY 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01937 795 MobiDBLite consensus disorder prediction 98 152 - -
Tsu04g01937 795 MobiDBLite consensus disorder prediction 168 201 - -
Tsu04g01937 795 MobiDBLite consensus disorder prediction 1 47 - -
Tsu04g01937 795 Gene3D - 376 465 IPR012677 -
Tsu04g01937 795 MobiDBLite consensus disorder prediction 756 795 - -
Tsu04g01937 795 Gene3D - 149 281 IPR012677 -
Tsu04g01937 795 MobiDBLite consensus disorder prediction 762 788 - -
Tsu04g01937 795 CDD RRM_SF 288 359 - -
Tsu04g01937 795 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 368 IPR000504 GO:0003723
Tsu04g01937 795 MobiDBLite consensus disorder prediction 710 744 - -
Tsu04g01937 795 Gene3D - 286 367 IPR012677 -
Tsu04g01937 795 SMART rrm1_1 382 457 IPR000504 GO:0003723
Tsu04g01937 795 SMART rrm1_1 287 364 IPR000504 GO:0003723
Tsu04g01937 795 SMART rrm1_1 207 280 IPR000504 GO:0003723
Tsu04g01937 795 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 381 463 IPR000504 GO:0003723
Tsu04g01937 795 MobiDBLite consensus disorder prediction 98 201 - -
Tsu04g01937 795 PANTHER RNA RECOGNITION MOTIF 1 795 - -
Tsu04g01937 795 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 795 - -
Tsu04g01937 795 MobiDBLite consensus disorder prediction 710 733 - -
Tsu04g01937 795 MobiDBLite consensus disorder prediction 599 639 - -
Tsu04g01937 795 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Tsu04g01937 795 CDD RRM_SF 383 440 - -
Tsu04g01937 795 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 357 IPR000504 GO:0003723
Tsu04g01937 795 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 276 IPR000504 GO:0003723
Tsu04g01937 795 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 383 441 IPR000504 GO:0003723
Tsu04g01937 795 SUPERFAMILY RNA-binding domain, RBD 286 441 IPR035979 GO:0003676
Tsu04g01937 795 Coils Coil 58 78 - -
Tsu04g01937 795 MobiDBLite consensus disorder prediction 447 692 - -
Tsu04g01937 795 SUPERFAMILY RNA-binding domain, RBD 207 310 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01937 Tsu-Chr4 20916769 20923106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01937 208 449 Eukaryotic Initiation Factors Gene Family AT1G71770 23.047 3.03e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01937 - - gmx:100811387 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00103 08 952697 959021 Tsu04g01937 04 20916769 20923106 PCT