Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01916 ATGCTATCAGGAACCATTCCTCCAAATTTTGAAAGGAGTTTGGTTTTTGTTAATATATCAGACAACCAATTAGAAGGGCCACTTCCAAATATTCCAGCTTTTGTTAATGCTTCTTttgaatcattaaaaaataacaaagaccTATGTGGAAATATCACAGGTTTGATTCCTTGTGCATCAAACCATAGTAGAAAGAGCAAAAATGTCCTCCGATCAGTATTCATTGCTTTAGGAGCTCTAATATTTGTGTTGTGCATGGTTGGAATTTCAATGTATATTTTGCGTCGAAGGAAAAAACCAAAGGAAGAAAGCCAAAATGTAGAAGAAGCACAAAGGGGAGTACTGTTTTCAATTTGGAGTCATGATGAAAaaatgatgtttgaaaatatcATTGAAGCTACTGAGAATTTTGATGACAAATATCTCATTGGAGTTGGAAGTCAAGGAAATGTTTACAAGGTAGAGTTGTCTGCAGGTACCGTTGTTGCGGTGAAGAAACTTCATTCAGTTACAGATGAAGAAATGTCAACTTTTAGTTCAAAAACTTTTAAGAGTGAGATTGAAACCTTAGCAGAAATCAAGCACAGGAACATCATTAAACTTATTGGATTTTGCTCACATTCCAAGTTCTCATTTTTGGTTTACAACTTCTTGGAAGGTGGAAGCTTAGATCATATACTAAACAATGACACATACGCCTCTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTGTCCTACTTGCATCACGATTGCTCACCTCCAATTATTCACCGCGACATATCAAGCAAGAATGTCCTTCTTAATCTTGATTATGAAGCTCACGTCTCCGACTTCGGGACAGCAAAATTTCTAAAGCCTGGTTTACTTAGTTGGACCCAATTTGCAGGCACTTTTGGATATGCAGCACCAGagtTGGCACAAACAATGGAAGTGAATGAGAAATGTGATGTATACAGCTTTGGAGTACTTGCATTAGAAATCATAATGGGAAAACATCCGGGAGAtctcatttcattatttttgtcACCATCTACAAGGCCGATGGCTAATGATATGTTGTTGATAGATGTTTTAGATCAACGACCTCAACAAGTTATGAAACCAATTGATGAGGAGGTTATCTAG 1149 0.3551 MLSGTIPPNFERSLVFVNISDNQLEGPLPNIPAFVNASFESLKNNKDLCGNITGLIPCASNHSRKSKNVLRSVFIALGALIFVLCMVGISMYILRRRKKPKEESQNVEEAQRGVLFSIWSHDEKMMFENIIEATENFDDKYLIGVGSQGNVYKVELSAGTVVAVKKLHSVTDEEMSTFSSKTFKSEIETLAEIKHRNIIKLIGFCSHSKFSFLVYNFLEGGSLDHILNNDTYASAFDWEKRVNVVKGVANALSYLHHDCSPPIIHRDISSKNVLLNLDYEAHVSDFGTAKFLKPGLLSWTQFAGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIIMGKHPGDLISLFLSPSTRPMANDMLLIDVLDQRPQQVMKPIDEEVI 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01916 382 Gene3D Ribonuclease Inhibitor 1 67 IPR032675 -
Tsu04g01916 382 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 382 - -
Tsu04g01916 382 SUPERFAMILY Protein kinase-like (PK-like) 119 347 IPR011009 -
Tsu04g01916 382 ProSitePatterns Tyrosine protein kinases specific active-site signature. 263 275 IPR008266 GO:0004672|GO:0006468
Tsu04g01916 382 Gene3D Transferase(Phosphotransferase) domain 1 218 381 - -
Tsu04g01916 382 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 382 - -
Tsu04g01916 382 Gene3D Phosphorylase Kinase; domain 1 96 217 - -
Tsu04g01916 382 ProSiteProfiles Protein kinase domain profile. 137 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01916 382 Pfam Protein kinase domain 139 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01916 Tsu-Chr4 20704823 20706082 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01916 2 311 Receptor kinase-like Gene Family AT4G08850 49.062 3.28e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g01916 Pkinase 4.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01916 - - mtr:MTR_7g081410 659.062