Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01911 ATGTGGAAATTGAAGAGTTTAAAAGGCCTTGATTTTTATGAATGTAAACTAAGTGGATCAATTCCTAATTCCATAGGAAATTTATCCAACCTATCATATCTAGATTTAAGTAAAAACAATTGGTCTAGTGGTCCTATTCCTCCTGAGATTGGAAAATTGAACAAATTAGAGTATCTTGCAATTATAAAAAGTAACCTAATTGGTTCCATTCCCCAAGAAATTGGTTTGTTGACAGAACTTACTGTTCTTGAATTGTCAAACAACTCTCTATCTGGTGTTATCCCTGAAACCATAGGCAACATGAGAAAACTAAATGGACTTTACCTTAGGTATAACAATAAGTTGTCTGGTACAATTCCACAATCCTTGTGGAACATGTCTAGCTTGACCGATATCTACCTCTTTAACATGAATCTTTCTGGTTCAATCCCTGATTCTATACAAAACTTGGTTAGTGTGAATTTCCTTTCACTTGATTTCAATCAACTTTCTGGATCCATTCCTTCCACAATTGGAAACTTGAAAAACCTCACCCATTTGTATTTGGGAATGAATCGACTTTCTGGATCGATTCCTGCTTCAATAGGAAATTTGATCAATTTGCAAGCCTTTAGTGTCCAAGTAAACAATCTCTCTGGTACTATTCCAGCTACAATTGGGAATTTGCAGCTGCTCAATGTCTTTGAAGTAGCTACTAATAAACTTTATGGTAGACTTCCAGATGGACTTTATAACATTACTGATTGGCATTCCTTTGTTGTATCTGAGAATGATTTAGTTGGTCATTTGCCGCCGAAAATATGTTCTGGTGGAATATTATATAACTTCAATGCTGATCACAACCGTTTTACCGGTCTGGTACCAACAAGTTTGAAGGACTGCTCTACCCTTGAAAGATTCAGAATTGATAAAAATTCGATAGAAGGTGATATTGCACGAGATTTTGGTGTGTATCCGAAGTTGGAATACATTGATATGAGTGACAATAAACTTCATGGACACATTTCACCAAACTGGGGGAAGTCTCTTGATCTTGATACCTTCATAATATCTAATAATAATGTTTCTGGTGGTATACCATTAGAACTTATTGGCTTACCCAAGCTAGGTAAGCTTCACCTTTCTTCAAATCATTTGATTGGGAAACTTCCAAAGGAATTAGGACGCATGAAATCATTAGTCGAACTCAAGATAAGTAACAATCATTTCACAGATAGCATCCCAGCAGAAATTGGATTACTGAAAATACTTAATGAATTGGATCTCGGAGGCAACGAGTTGAGTGGCACAATACCAGAAGAAGTTGTGAAGCTACCAAGGTTACGAAATTTGAATTTGAGCAGAAACAAAATCGAAGGAAGTATTCCCTTTCAGTTTGGTTCAGATTTGGAGTCACTTGATCTTAGTGGCAATTTTTTGAATGGAAAAATACCTCCATCTCTTGGAAACTTGGTTAGaaaaaaactaaatgaaGAAAGTCAAACTGAAGAAGCACAAAGGGGAGTACTATTTTCCATCTGGAGTTATGATGGAAaaatgatgtttgaaaatatcGTTGAAGCGACTGAGAATTTTGATGACAAATATCTCATTGGAGTTGGAAGTCAAGGAAATGTTTACAAGGCAGAATTGTCTGAAGGTATGGTGGTTGCGGTGAAGAAACTTCATTTAGTAACAGATGAAGAAATGTCAACTTTCAGTTCAAAGTCTTTTATGAGTGAGATTGAAACTTTGACAGGAATCAAACACAGGAACATCATAAAGCTTTATGGATTTTGCTCACATTCTAAGTTTTCATTTTTGGTTTACAAGTTCTTGGAAGGCGGAAGTTTAGATCATATACTAAACAATGACACATACGCCTCCGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTGTCCTATTTGCATCATGATTGCTCACCTCCTGTTATTCATCGCGATATATCGAGCAAAAATGCACTTTTGGTTATGCAGCTCCAGAGTTGGCACAAACCATGGAAGTGA 2028 0.3595 MWKLKSLKGLDFYECKLSGSIPNSIGNLSNLSYLDLSKNNWSSGPIPPEIGKLNKLEYLAIIKSNLIGSIPQEIGLLTELTVLELSNNSLSGVIPETIGNMRKLNGLYLRYNNKLSGTIPQSLWNMSSLTDIYLFNMNLSGSIPDSIQNLVSVNFLSLDFNQLSGSIPSTIGNLKNLTHLYLGMNRLSGSIPASIGNLINLQAFSVQVNNLSGTIPATIGNLQLLNVFEVATNKLYGRLPDGLYNITDWHSFVVSENDLVGHLPPKICSGGILYNFNADHNRFTGLVPTSLKDCSTLERFRIDKNSIEGDIARDFGVYPKLEYIDMSDNKLHGHISPNWGKSLDLDTFIISNNNVSGGIPLELIGLPKLGKLHLSSNHLIGKLPKELGRMKSLVELKISNNHFTDSIPAEIGLLKILNELDLGGNELSGTIPEEVVKLPRLRNLNLSRNKIEGSIPFQFGSDLESLDLSGNFLNGKIPPSLGNLVRKKLNEESQTEEAQRGVLFSIWSYDGKMMFENIVEATENFDDKYLIGVGSQGNVYKAELSEGMVVAVKKLHLVTDEEMSTFSSKSFMSEIETLTGIKHRNIIKLYGFCSHSKFSFLVYKFLEGGSLDHILNNDTYASAFDWEKRVNVVKGVANALSYLHHDCSPPVIHRDISSKNALLVMQLQSWHKPWK 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01911 675 SUPERFAMILY L domain-like 4 171 - -
Tsu04g01911 675 Gene3D Phosphorylase Kinase; domain 1 488 605 - -
Tsu04g01911 675 Gene3D Ribonuclease Inhibitor 246 364 IPR032675 -
Tsu04g01911 675 PRINTS Leucine-rich repeat signature 438 451 - -
Tsu04g01911 675 PRINTS Leucine-rich repeat signature 80 93 - -
Tsu04g01911 675 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 106 485 - -
Tsu04g01911 675 ProSiteProfiles Protein kinase domain profile. 525 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01911 675 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 104 - -
Tsu04g01911 675 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 106 485 - -
Tsu04g01911 675 Gene3D Ribonuclease Inhibitor 112 245 IPR032675 -
Tsu04g01911 675 Gene3D Ribonuclease Inhibitor 1 111 IPR032675 -
Tsu04g01911 675 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 104 - -
Tsu04g01911 675 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 486 666 - -
Tsu04g01911 675 Pfam Leucine Rich Repeat 176 198 IPR001611 GO:0005515
Tsu04g01911 675 Pfam Leucine Rich Repeat 463 484 IPR001611 GO:0005515
Tsu04g01911 675 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 486 666 - -
Tsu04g01911 675 Pfam Leucine rich repeat 79 136 IPR001611 GO:0005515
Tsu04g01911 675 Pfam Leucine rich repeat 392 451 IPR001611 GO:0005515
Tsu04g01911 675 Pfam Protein kinase domain 527 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01911 675 SUPERFAMILY RNI-like 114 486 - -
Tsu04g01911 675 Gene3D Transferase(Phosphotransferase) domain 1 606 669 - -
Tsu04g01911 675 SUPERFAMILY Protein kinase-like (PK-like) 509 663 IPR011009 -
Tsu04g01911 675 Gene3D Ribonuclease Inhibitor 365 487 IPR032675 -
Tsu04g01911 675 SMART LRR_typ_2 174 198 IPR003591 -
Tsu04g01911 675 SMART LRR_typ_2 366 390 IPR003591 -
Tsu04g01911 675 SMART LRR_typ_2 438 462 IPR003591 -
Tsu04g01911 675 SMART LRR_typ_2 28 53 IPR003591 -
Tsu04g01911 675 SMART LRR_typ_2 77 100 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01911 Tsu-Chr4 20629574 20632070 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01911 1 663 Receptor kinase-like Gene Family AT4G08850 36.654 2.72e-141 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g01911 Pkinase 8.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01911 - - gmx:100815688 632.098