Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01907 ATGGAACCTAAATTTTTCAAGAATCTAGCATGTGTGCAGATTCTCTTCATAATCCTTTGGGTCCTTTTAACAATCTTTTTTCCTCAAATTGCTTGTTTTTCCAATATCAATTATTTGACCTCAACTTCTCATTATCAACCTAGCCTTGAAGACCATGAAGCAAAAGCTCTGTTGAAGTGGAAAGATAGCTTTGAAAACCACAGCCAAGCTCTCTTGTCAACATGGACAAGAACCACAAATCCATGCAAATGGGAAGGAATCCAGTGTgacaaatccaaatccatctcTAGCATAAATCTTGCAAATTATGAACTAAAAGGTACACTCCACACTCTCAACTTCACCTCATTCCCTAACCTTCTCAACCTAAATATCTACAACAACTTATTTTATGGGACCATTCCTCCACAAATTGGTAACATGTCCAAAATAAATGTTTTGAACCTTTCTCGTAACCCACTTGAAGGTTCCATCCCCAAAGAAATGTGGACATTGAGGAGTTTAAAAGCCCTTGATCTTTTTGAATGTACACTGAGTGGTGAACTTCCTAATTCCATAGCAAACTTGTCCAACCTCTCATATCTAGATTTCACTAGGAATAAATTTTCTAGTGGTTACATTCCTCATGATATTGGAAAATTGAACCACTTGGAGTATCTAGCTATTACAGAATGTAATCGTATTGGTCCCATTCCAAAAGAAATTGGAATGTTGACAAAACTTGGTGTTATGGATTTGGCAGGGAACACTTTATCTGGTACAATCCCAGAATCAATTGGTAACATGACCAATTTAAATCAACTTTACCTTTCAAATAACACGTTGTCTGGAACAATCCCACcctccttgtggaacttgtcTTATTTGACTCTACTCTACCTTAGTAACAATAATCTTTCTGGATCAATCCCTCCTTCTATACAAAACTTGGTTAATTTGGATGAACTTTCACTTTTTGAAAACCACTTTTCTGGATCTATTCCTTCCACAATCGGAAACTTGACAAAGCTAACAACATTATTCTTGTTCACTAATCGTTTTTCTGGATCAATTCCTACTTCTATTGGAAATCTAATCAATATGCTTACCCTTAGTTTGATTGAAAACAATCTTTCTGGAACTATTCCTGCTATAATTGGAAATTTGACAAGACTAACAAACTTAGTATtatccaccaataaatttcaTGGTAGCATTCCACTTAGCCTGTATAACTTTACCAACTGGGAAATCTTTGAATTTGGGGATAATGATTTGATTGGCAATTTGTCACCTCATGTATGTTCTGGTGGATCTCTAAAAGTATTCGATGCTTCTCATAACCATTTCACCGGCCCAGTACCAAGAAGTTTGAAAAACTGTTCTAGTATTGAAAGACTTAGGCTTGAGGATAATCAAATAGAAGGAGATGTAGCACAAGATTTTGGTGTATATCCGAATTTGTATTACATTGATCTAAGTGACAATAACTTTTATGGTCACATTTCACCAAACTGGGGGAAGAGCCCCAATCTTACTAACTTCATGATATCCAACAATAATATCAATGGTGGCATACCATTAACACTTTTGGAGGCAAACAAGCTAGGCAAGCTCCACCTTTCTTCAAACCACTTAACAGGAAAACTTCCAAAGGAACTTGGATACGTGAAATCATTACTTGAAGTTAAGATCAACAACAATCATCTTTCAGGAAACATTCCTACTGAAATTGGATTGCTACAGAATCTCACAGATTTCGATGTAGGAGGAAACATGTTGAATGGAACAATACCAAAAGAAGTTGTGAAGTTACCCTTGTTACGGAACTTGAACTTgagcaaaaacaaaattgaagggaGAATCCCGTCAGACTTTTCCATGTCACAGCCTCTTGAATCTCTTGATCTTAGCGGGAATTTGTTGAGTGGAACAATACCAACAGTGTTAGGAGAGTTGAAGCAATTGCAACAACTGAATCTGTCATCCAATAATCTTTCTGGCACCATTCCATCTAGTTTTGATGATGCCATGTCAAGCTTGACCTATATCAACATATCAAACAACCAGTTAGAAGGGAGGTTACCAAATAATCAAGCTTTTCTCAAAGCTCCAATTGAATCATTAATAAATAACAAAGGCTTATGTGGTAATCGCACTGGCTTAGTGGTTTGCACAACCAACCATAGCCAAAAGAGCCATAAGATTCTCCTACTAGTATTGTTTGTTATCTTAGGTGGTCTAGTACTAGTATTTTGTGGAGTGGGAATTTCAATGTATATTCTTTGTCGGAGAGCAAAAAAGGCAAAAACCAAAGATAAAGATTCCAACGAAGCACAAGAAGAAAAAGTGTTTTCCATATGGAGTCATGATggaaaaatgttatttgaaaatatcattGAAGCTACCAATAACTTTGATGATGATCATCTCATTGGAGTGGGAGGGGAAGGATCTGTTTATAAGGCTAAGTTGTCTGCAGATATGGTTGTTGCAGTGAAGAAACTTCATTCAGGAATAGATGGGGAGAGACCAAATTTCAAagcatttgaaaatgaaattaaagcTTTGACAGAAATTAGGCATCGTAACATCATAAAGCTCCATGGATATTGCCAACATTCAAGATTCTCATTTTTGGTTTATAAGTTCTTGGAAGGGGGAACTTTGACAAAAATTCTAAACGATGACTCGCAAGCCGTTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCTAGTGCTTTGTCCTATATGCATCATGATATCACACCACCGATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTTTGGATTTATCTTACGAAGCTCAACTTTCGGATTTTGGAACAGCTAAGTTTCTAAAGCCTGATTCAAGTAGTTGGACCACATTTGCAGGCACCTTTGGATATGCAGCTCCAGaGTTTGCCCAGACCATGGAAGTGACTGAGAAGTGTGATGTTTACAGTTTTGGAGTTCTTTGTTTTGAAATCCTTCTAGGAAACCATCCAGCAGATTTCGTTTCTTCATTGTTCTCATCATCTACAGCAACAACGACTTATAATTTGTTGTTGATAGATGTATTAGACCAACGCCCTCCTCAACCTACCAATTCAATTGTTGGGGATATCATCTTGATTACAAGATTGGCATTTTCATGCTTGAGTAAAAATCCATCTTCTCGACCCACAATGGATTATGTTTCAAAAGAAATGAGAAAATCACAATCACCTTTAGTGGAACAGTTCCCTCAAATCAGACTTGGACAACtccaataa 3270 0.3554 MEPKFFKNLACVQILFIILWVLLTIFFPQIACFSNINYLTSTSHYQPSLEDHEAKALLKWKDSFENHSQALLSTWTRTTNPCKWEGIQCDKSKSISSINLANYELKGTLHTLNFTSFPNLLNLNIYNNLFYGTIPPQIGNMSKINVLNLSRNPLEGSIPKEMWTLRSLKALDLFECTLSGELPNSIANLSNLSYLDFTRNKFSSGYIPHDIGKLNHLEYLAITECNRIGPIPKEIGMLTKLGVMDLAGNTLSGTIPESIGNMTNLNQLYLSNNTLSGTIPPSLWNLSYLTLLYLSNNNLSGSIPPSIQNLVNLDELSLFENHFSGSIPSTIGNLTKLTTLFLFTNRFSGSIPTSIGNLINMLTLSLIENNLSGTIPAIIGNLTRLTNLVLSTNKFHGSIPLSLYNFTNWEIFEFGDNDLIGNLSPHVCSGGSLKVFDASHNHFTGPVPRSLKNCSSIERLRLEDNQIEGDVAQDFGVYPNLYYIDLSDNNFYGHISPNWGKSPNLTNFMISNNNINGGIPLTLLEANKLGKLHLSSNHLTGKLPKELGYVKSLLEVKINNNHLSGNIPTEIGLLQNLTDFDVGGNMLNGTIPKEVVKLPLLRNLNLSKNKIEGRIPSDFSMSQPLESLDLSGNLLSGTIPTVLGELKQLQQLNLSSNNLSGTIPSSFDDAMSSLTYINISNNQLEGRLPNNQAFLKAPIESLINNKGLCGNRTGLVVCTTNHSQKSHKILLLVLFVILGGLVLVFCGVGISMYILCRRAKKAKTKDKDSNEAQEEKVFSIWSHDGKMLFENIIEATNNFDDDHLIGVGGEGSVYKAKLSADMVVAVKKLHSGIDGERPNFKAFENEIKALTEIRHRNIIKLHGYCQHSRFSFLVYKFLEGGTLTKILNDDSQAVAFDWEKRVNVVKGVASALSYMHHDITPPIVHRDISSKNVLLDLSYEAQLSDFGTAKFLKPDSSSWTTFAGTFGYAAPEFAQTMEVTEKCDVYSFGVLCFEILLGNHPADFVSSLFSSSTATTTYNLLLIDVLDQRPPQPTNSIVGDIILITRLAFSCLSKNPSSRPTMDYVSKEMRKSQSPLVEQFPQIRLGQLQ 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01907 1089 ProSitePatterns Tyrosine protein kinases specific active-site signature. 923 935 IPR008266 GO:0004672|GO:0006468
Tsu04g01907 1089 SUPERFAMILY RNI-like 364 690 - -
Tsu04g01907 1089 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 189 265 - -
Tsu04g01907 1089 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 266 1088 - -
Tsu04g01907 1089 PRINTS Leucine-rich repeat signature 646 659 - -
Tsu04g01907 1089 PRINTS Leucine-rich repeat signature 625 638 - -
Tsu04g01907 1089 Pfam Protein kinase domain 801 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01907 1089 PANTHER LRR RECEPTOR-LIKE KINASE 13 195 - -
Tsu04g01907 1089 PANTHER LRR RECEPTOR-LIKE KINASE 266 1088 - -
Tsu04g01907 1089 SUPERFAMILY RNI-like 97 419 - -
Tsu04g01907 1089 SUPERFAMILY Protein kinase-like (PK-like) 784 1066 IPR011009 -
Tsu04g01907 1089 Gene3D Transferase(Phosphotransferase) domain 1 878 1080 - -
Tsu04g01907 1089 SMART LRR_typ_2 310 334 IPR003591 -
Tsu04g01907 1089 SMART LRR_typ_2 262 286 IPR003591 -
Tsu04g01907 1089 SMART LRR_typ_2 671 696 IPR003591 -
Tsu04g01907 1089 SMART LRR_typ_2 646 669 IPR003591 -
Tsu04g01907 1089 SMART LRR_typ_2 598 621 IPR003591 -
Tsu04g01907 1089 SMART LRR_typ_2 141 165 IPR003591 -
Tsu04g01907 1089 SMART LRR_typ_2 189 214 IPR003591 -
Tsu04g01907 1089 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 13 195 - -
Tsu04g01907 1089 Pfam Leucine rich repeat 240 299 IPR001611 GO:0005515
Tsu04g01907 1089 Pfam Leucine rich repeat 625 684 IPR001611 GO:0005515
Tsu04g01907 1089 Gene3D Ribonuclease Inhibitor 303 410 IPR032675 -
Tsu04g01907 1089 Gene3D Phosphorylase Kinase; domain 1 758 877 - -
Tsu04g01907 1089 PANTHER LRR RECEPTOR-LIKE KINASE 189 265 - -
Tsu04g01907 1089 Gene3D Ribonuclease Inhibitor 207 302 IPR032675 -
Tsu04g01907 1089 Pfam Leucine rich repeat N-terminal domain 51 90 IPR013210 -
Tsu04g01907 1089 Gene3D Ribonuclease Inhibitor 411 718 IPR032675 -
Tsu04g01907 1089 ProSiteProfiles Protein kinase domain profile. 799 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01907 1089 Gene3D Ribonuclease Inhibitor 50 206 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01907 Tsu-Chr4 20538273 20542171 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01907 52 971 Receptor kinase-like Gene Family AT4G08850 43.623 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g01907 Pkinase 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01907 - - gmx:100815688 1402.11