Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01875 ATGTTTTCTACtaccaaagacttggagttAGCATATTTGGAACACATTCAACAATACCTTCTTCATGATGACTCTAACATTCTTACATCACAACATCAACAAATTCAAAgccctaataataataataattcaaacaaaCCTTCATCCGCGCGTGAAGTGCATGCGCCTCCCACATGGAAGCGCTATAGGGGTGTGAGGCGTAGGCCTTGGGGGAAATTTGCAGCAGAGATCAGagatccaaaaaaaaatggtgcTAGAGTTTGGCTTGGTACTTATGTGACTGAGGAGGAAGCCGGTTTGGCTTATGACAAAGCTGCTTTCAAGATGCGCGGCCAAAAGGCCAAGCTCAATTTTCCTCATCTCATCGGCTCTGATATATTTTCAGAGCCAAAGATGGAGGTGACTTTGAAATGGGAATCACCAGAGCCTTCTTCATTAGAAGATAGTTGTGAGTCATCATCACAAGGGTCAAAGAGGAAGAGGAGCGTGGTTAATCTACTTAATAAATTAGCCAAAAATAGAAGTCAAGCCATGGTGGTAGAAAATGAAATGGCTTCACAAGCAAATGATGTTGAGCAATGGGTGAATGAGTTGAATGATTTCTCTCTAATATGGTGTTCTTAG 624 0.3798 MFSTTKDLELAYLEHIQQYLLHDDSNILTSQHQQIQSPNNNNNSNKPSSAREVHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAGLAYDKAAFKMRGQKAKLNFPHLIGSDIFSEPKMEVTLKWESPEPSSLEDSCESSSQGSKRKRSVVNLLNKLAKNRSQAMVVENEMASQANDVEQWVNELNDFSLIWCS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01875 207 Gene3D AP2/ERF domain 60 120 IPR036955 GO:0003700|GO:0006355
Tsu04g01875 207 MobiDBLite consensus disorder prediction 30 51 - -
Tsu04g01875 207 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Tsu04g01875 207 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Tsu04g01875 207 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 176 - -
Tsu04g01875 207 PANTHER DNA-BINDING DOMAIN 1 176 IPR044808 GO:0003700|GO:0009873
Tsu04g01875 207 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Tsu04g01875 207 MobiDBLite consensus disorder prediction 30 58 - -
Tsu04g01875 207 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Tsu04g01875 207 CDD AP2 60 121 IPR001471 GO:0003700|GO:0006355
Tsu04g01875 207 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Tsu04g01875 207 PRINTS Ethylene responsive element binding protein signature 101 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01875 Tsu-Chr4 20115668 20116291 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01875 45 144 AP2-EREBP Transcription Factor Family AT2G44840 66.019 3.41e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu04g01875 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01875 K09286 - gmx:102663872 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00064 08 562741 563316 Tsu04g01875 04 20115668 20116291 PCT