Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01872 ATGGCTTCTATCAACAATGACTCTGATTTTGCATATTTAGAACACATTCAAAAATTCCTTCTTTTTGATGATTCCAGCATTCTAACATCTCATCAACCTTTACCGAGCGCTAAAAGTGACAACGATTCGGATCCGAAAGTTGAGGTGCCCGAAGTAAGCGCCCCTCCGTCATGGAAGCGATACAAGGGTGTAAGGCGTAGGCCATGGGGGAAATTCGCGGCAGAGATCAGAGATCCTAAAAAGAACGGTGCTAGAGTTTGGCTTGGAACTTATTTGACCGAAGAGGAAGCAGGTTTGGCTTACGACAAAGCTGCTTTCAAAATGCGTGGCCGAAAAGCCAAACTTAATTTCCCACACCTCATTGGCTCTGATGAGTTGACATCAGAGCCAAAGCGAGAGGTTGCTTTGAAACGGGAATCACCCGAGCCTTCTTCATCAGAGGGAAGTTGTGAGTCAACATCACCAGGGACGAAGAGGAGGAGAGGCATGGTTGACCTACTTAACAAATTAGCCAAGAATAGAAGCCAAAGCATGGTGGTTGAGATTGAAAAGGCCTCACAAGCAAATGATGATTTTGAGCAATGGGTGAATGAGTTAAATGATTGCACTCTAATCTGGAGCTCATAG 627 0.4498 MASINNDSDFAYLEHIQKFLLFDDSSILTSHQPLPSAKSDNDSDPKVEVPEVSAPPSWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAGLAYDKAAFKMRGRKAKLNFPHLIGSDELTSEPKREVALKRESPEPSSSEGSCESTSPGTKRRRGMVDLLNKLAKNRSQSMVVEIEKASQANDDFEQWVNELNDCTLIWSS 208
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01872 208 MobiDBLite consensus disorder prediction 124 162 - -
Tsu04g01872 208 PANTHER DNA-BINDING DOMAIN 1 176 IPR044808 GO:0003700|GO:0009873
Tsu04g01872 208 CDD AP2 59 120 IPR001471 GO:0003700|GO:0006355
Tsu04g01872 208 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Tsu04g01872 208 PRINTS Ethylene responsive element binding protein signature 100 120 IPR001471 GO:0003700|GO:0006355
Tsu04g01872 208 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 176 - -
Tsu04g01872 208 Gene3D AP2/ERF domain 59 119 IPR036955 GO:0003700|GO:0006355
Tsu04g01872 208 MobiDBLite consensus disorder prediction 125 140 - -
Tsu04g01872 208 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Tsu04g01872 208 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Tsu04g01872 208 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
Tsu04g01872 208 MobiDBLite consensus disorder prediction 32 54 - -
Tsu04g01872 208 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
Tsu04g01872 208 MobiDBLite consensus disorder prediction 142 156 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu04g01872 Tsu-Chr4 20094033 20094693 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01872 60 147 AP2-EREBP Transcription Factor Family AT2G44840 71.591 5.13e-38 129
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g01872 AP2 1.7e-13 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01872 K09286 - gmx:102663872 237.654
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00062 08 538495 539037 Tsu04g01872 04 20094033 20094693 PCT