Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g01872 | ATGGCTTCTATCAACAATGACTCTGATTTTGCATATTTAGAACACATTCAAAAATTCCTTCTTTTTGATGATTCCAGCATTCTAACATCTCATCAACCTTTACCGAGCGCTAAAAGTGACAACGATTCGGATCCGAAAGTTGAGGTGCCCGAAGTAAGCGCCCCTCCGTCATGGAAGCGATACAAGGGTGTAAGGCGTAGGCCATGGGGGAAATTCGCGGCAGAGATCAGAGATCCTAAAAAGAACGGTGCTAGAGTTTGGCTTGGAACTTATTTGACCGAAGAGGAAGCAGGTTTGGCTTACGACAAAGCTGCTTTCAAAATGCGTGGCCGAAAAGCCAAACTTAATTTCCCACACCTCATTGGCTCTGATGAGTTGACATCAGAGCCAAAGCGAGAGGTTGCTTTGAAACGGGAATCACCCGAGCCTTCTTCATCAGAGGGAAGTTGTGAGTCAACATCACCAGGGACGAAGAGGAGGAGAGGCATGGTTGACCTACTTAACAAATTAGCCAAGAATAGAAGCCAAAGCATGGTGGTTGAGATTGAAAAGGCCTCACAAGCAAATGATGATTTTGAGCAATGGGTGAATGAGTTAAATGATTGCACTCTAATCTGGAGCTCATAG | 627 | 0.4498 | MASINNDSDFAYLEHIQKFLLFDDSSILTSHQPLPSAKSDNDSDPKVEVPEVSAPPSWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAGLAYDKAAFKMRGRKAKLNFPHLIGSDELTSEPKREVALKRESPEPSSSEGSCESTSPGTKRRRGMVDLLNKLAKNRSQSMVVEIEKASQANDDFEQWVNELNDCTLIWSS | 208 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g01872 | 208 | MobiDBLite | consensus disorder prediction | 124 | 162 | - | - | |
Tsu04g01872 | 208 | PANTHER | DNA-BINDING DOMAIN | 1 | 176 | IPR044808 | GO:0003700|GO:0009873 | |
Tsu04g01872 | 208 | CDD | AP2 | 59 | 120 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu04g01872 | 208 | PRINTS | Ethylene responsive element binding protein signature | 61 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu04g01872 | 208 | PRINTS | Ethylene responsive element binding protein signature | 100 | 120 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu04g01872 | 208 | PANTHER | AP2-DOMAIN DNA-BINDING PROTEIN | 1 | 176 | - | - | |
Tsu04g01872 | 208 | Gene3D | AP2/ERF domain | 59 | 119 | IPR036955 | GO:0003700|GO:0006355 | |
Tsu04g01872 | 208 | MobiDBLite | consensus disorder prediction | 125 | 140 | - | - | |
Tsu04g01872 | 208 | Pfam | AP2 domain | 60 | 110 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu04g01872 | 208 | ProSiteProfiles | AP2/ERF domain profile. | 60 | 118 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu04g01872 | 208 | SMART | rav1_2 | 60 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu04g01872 | 208 | MobiDBLite | consensus disorder prediction | 32 | 54 | - | - | |
Tsu04g01872 | 208 | SUPERFAMILY | DNA-binding domain | 60 | 119 | IPR016177 | GO:0003677 | |
Tsu04g01872 | 208 | MobiDBLite | consensus disorder prediction | 142 | 156 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g01872 | Tsu-Chr4 | 20094033 | 20094693 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g01872 | 60 | 147 | AP2-EREBP Transcription Factor Family | AT2G44840 | 71.591 | 5.13e-38 | 129 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Tsu04g01872 | AP2 | 1.7e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g01872 | K09286 | - | gmx:102663872 | 237.654 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu08g00062 | 08 | 538495 | 539037 | Tsu04g01872 | 04 | 20094033 | 20094693 | PCT |